Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010204.1 Kokia drynarioides strain JFW-HI SEQ_125022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2916
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33


Found at i:788 original size:28 final size:28

Alignment explanation


    Indices: 756--815  Score: 75
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        746 ACTTTAGTTT

                   * *       *   *      
        756 CTTCGCAGCTTCACTATTACATCTCGCA
          1 CTTCGCAACATCACTATGACAGCTCGCA

                               *        
        784 CTTCGCAACATCACTATGATAGCTCGCA
          1 CTTCGCAACATCACTATGACAGCTCGCA

                
        812 CTTC
          1 CTTC

        816 TTTGTTCGTC


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.23, C:0.35, G:0.12, T:0.30


Consensus pattern (28 bp):   
CTTCGCAACATCACTATGACAGCTCGCA
Done.