Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010210.1 Kokia drynarioides strain JFW-HI SEQ_125030, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30


Found at i:456 original size:17 final size:17

Alignment explanation


    Indices: 434--507  Score: 85
    Period size: 17  Copynumber: 4.2  Consensus size: 17

        424 AAATTGATTC

                         *   
        434 AAATTTATTTTAATTTT
          1 AAATTTATTTTAAATTT

                               
        451 AAATTTATCTTTTAAATTT
          1 AAATTTA--TTTTAAATTT

                  **         
        470 AAATTTGCTTTAAATTT
          1 AAATTTATTTTAAATTT

                   *  *      
        487 AAATTTAATTAAAATTT
          1 AAATTTATTTTAAATTT

                
        504 AAAT
          1 AAAT

        508 GGATTTAAAA


Statistics
Matches: 49,  Mismatches: 6, Indels: 4
        0.83            0.10        0.07

Matches are distributed among these distances:
  17   34  0.69
  19   15  0.31

ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54


Consensus pattern (17 bp):   
AAATTTATTTTAAATTT

Found at i:472 original size:6 final size:6

Alignment explanation


    Indices: 442--507  Score: 55
    Period size: 6  Copynumber: 11.2  Consensus size: 6

        432 TCAAATTTAT

                 *             **                   **              
        442 TTTAAT TTTAAA TTTATCT TTTAAA TTTAAA TTT-GC TTTAAA TTTAAA
          1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA

                     *            
        490 TTT-AA TTAAAA TTTAAA T
          1 TTTAAA TTTAAA TTTAAA T

        508 GGATTTAAAA


Statistics
Matches: 46,  Mismatches: 11, Indels: 6
        0.73            0.17        0.10

Matches are distributed among these distances:
   5    7  0.15
   6   35  0.76
   7    4  0.09

ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55


Consensus pattern (6 bp):   
TTTAAA

Found at i:637 original size:18 final size:18

Alignment explanation


    Indices: 614--653  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        604 CAAATAAACC

                              
        614 AATTACACCCCAAACCCA
          1 AATTACACCCCAAACCCA

                   * * *      
        632 AATTACATCTCTAACCCA
          1 AATTACACCCCAAACCCA

                
        650 AATT
          1 AATT

        654 CACAAGTCAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23


Consensus pattern (18 bp):   
AATTACACCCCAAACCCA
Done.