Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010216.1 Kokia drynarioides strain JFW-HI SEQ_125038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1944
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34


Found at i:551 original size:23 final size:25

Alignment explanation


    Indices: 525--570  Score: 69
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        515 GCAATTAGGG

                                     
        525 AATTAT-TGTTTAG-ATTTAATTCA
          1 AATTATCTGTTTAGAATTTAATTCA

                    *              
        548 AATTATCTTTTTAGAATTTAATT
          1 AATTATCTGTTTAGAATTTAATT

        571 TGGATCCAGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    6  0.30
  25    8  0.40

ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54


Consensus pattern (25 bp):   
AATTATCTGTTTAGAATTTAATTCA

Done.