Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010217.1 Kokia drynarioides strain JFW-HI SEQ_125039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4846
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37


Found at i:3557 original size:18 final size:20

Alignment explanation


    Indices: 3534--3578  Score: 67
    Period size: 21  Copynumber: 2.3  Consensus size: 20

       3524 AAGTTTTTTT

                                
       3534 TCAAAA-TA-TTTGAACAAC
          1 TCAAAAGTACTTTGAACAAC

                                 
       3552 TCAAAAGTACTTTTGAACAAC
          1 TCAAAAGTAC-TTTGAACAAC

                  
       3573 TCAAAA
          1 TCAAAA

       3579 ATATCTTATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    6  0.25
  19    2  0.08
  21   16  0.67

ACGTcount: A:0.49, C:0.18, G:0.07, T:0.27


Consensus pattern (20 bp):   
TCAAAAGTACTTTGAACAAC
Done.