Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010225.1 Kokia drynarioides strain JFW-HI SEQ_125054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2074
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:458 original size:23 final size:23

Alignment explanation


    Indices: 402--458  Score: 62
    Period size: 23  Copynumber: 2.5  Consensus size: 23

        392 TTTTTTATTT

                *               *  
        402 AAAATTTTATTATTAATGTCTAA
          1 AAAAATTTATTATTAATGTCAAA

                  *            *   
        425 AAAAATATATTATTAATG-GAAA
          1 AAAAATTTATTATTAATGTCAAA

                        
        447 AAAAATCTTATT
          1 AAAAAT-TTATT

        459 TAAAACTTAA


Statistics
Matches: 28,  Mismatches: 5, Indels: 2
        0.80            0.14        0.06

Matches are distributed among these distances:
  22    8  0.29
  23   20  0.71

ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40


Consensus pattern (23 bp):   
AAAAATTTATTATTAATGTCAAA
Done.