Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010227.1 Kokia drynarioides strain JFW-HI SEQ_125056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36


Found at i:402 original size:32 final size:32

Alignment explanation


    Indices: 361--426  Score: 132
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        351 AAAATATTAA

                                            
        361 ATAATTAATTCAAGAAAATTACCTTTTCGATC
          1 ATAATTAATTCAAGAAAATTACCTTTTCGATC

                                            
        393 ATAATTAATTCAAGAAAATTACCTTTTCGATC
          1 ATAATTAATTCAAGAAAATTACCTTTTCGATC

              
        425 AT
          1 AT

        427 TCCATTTATT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38


Consensus pattern (32 bp):   
ATAATTAATTCAAGAAAATTACCTTTTCGATC
Done.