Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010233.1 Kokia drynarioides strain JFW-HI SEQ_125064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8870
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32


Found at i:5837 original size:26 final size:27

Alignment explanation


    Indices: 5801--5851  Score: 95
    Period size: 26  Copynumber: 1.9  Consensus size: 27

       5791 TCAAAAGAGG

                                       
       5801 CATTGGAAAAAA-AAGAAGACATGCTA
          1 CATTGGAAAAAAGAAGAAGACATGCTA

                                     
       5827 CATTGGAAAAAAGAAGAAGACATGC
          1 CATTGGAAAAAAGAAGAAGACATGC

       5852 CTAAGGAAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  26   12  0.50
  27   12  0.50

ACGTcount: A:0.53, C:0.12, G:0.22, T:0.14


Consensus pattern (27 bp):   
CATTGGAAAAAAGAAGAAGACATGCTA

Found at i:6869 original size:38 final size:38

Alignment explanation


    Indices: 6827--6906  Score: 99
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       6817 GTCTATTCAG

                     * *                      *    
       6827 AATTGCGCCTAGAATTATCACTGCATGATG-ATGTCCAA
          1 AATTGCGCCCAAAATTATCACTGCATGA-GCATGCCCAA

                 *              *                 
       6865 AATTGTGCCCAAAATTATCATTGCATGAGCATGCCCAA
          1 AATTGCGCCCAAAATTATCACTGCATGAGCATGCCCAA

                
       6903 AATT
          1 AATT

       6907 TTTGTTGCAC


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  37    1  0.03
  38   35  0.97

ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29


Consensus pattern (38 bp):   
AATTGCGCCCAAAATTATCACTGCATGAGCATGCCCAA
Done.