Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010239.1 Kokia drynarioides strain JFW-HI SEQ_125071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19741
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Found at i:1599 original size:218 final size:216
Alignment explanation
Indices: 884--2000 Score: 1225
Period size: 218 Copynumber: 5.2 Consensus size: 216
874 GCTCACATCA
884 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAG
1 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
* * *
948 AAATAATTCACACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTACAAAATGACAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACT
* * * * * *
1013 ATTTAGACCAAATGATGCGATTTTCCGAA-CGTGGAATGTTTGAAAAATTGCTCAAAAGGAATGA
130 ATTTAGACCAAAAGATGCGA-TTTCCCAAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAATGG
*
1077 ATCATCTTAAATACTTTAAGGAAC
193 ATCATCTTGAATACTTTAAGGAAC
* * * * * * * * * *
1101 CAAATTTATATAAGAACTCGTAGAAGTTTAACAAGTGCGGATGTTCATCCAAAAACCCAGAGAGA
1 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
* * * * * *
1166 AACAATTCTTAGGGAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTGCAAAATGACAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACTA
* * * ** * * * * *
1231 TGTAGACCATAGGATGCGATTTCCTGATCAT-G--T-TTCGGAAAGTTGCGCGAAGGATTGGATC
131 TTTAGACCAAAAGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
*
1292 ATCTTGAATACATTAAGGAAC
196 ATCTTGAATACTTTAAGGAAC
** * *
1313 CGAAAAGCAATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGAGA
1 C--AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA
* * * * *
1378 GAAACAATTCTCAAGTTAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAATTGACAAAC
64 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAAC
* * * * * * * *
1443 TGTTTAGACCAAAAGATGAGATTCCCCAAGCATGGACTGCTCGAAAAATTACTCGATGGAACATA
129 TATTTAGACCAAAAGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATG
* *
1508 GATCGTCTTGAATACTTTAAGCAA-
192 GATCATCTTGAATACTTTAAGGAAC
* * *
1532 TAGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAACCAAGAGAG
1 CA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
1597 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACT
* * ***
1662 ATTTAGA-CAAAATGATGCGATTTCCCGAGCATGGAATGTT-TAAAAATTGCTCTTGGGAATGGA
130 ATTTAGACCAAAA-GATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
** * *
1725 TTTTCGTGAATACTTTAGGGAAC
194 TCATCTTGAATACTTTAAGGAAC
* * * * * *
1748 CAAAGTTAAAAAATAACTCATAAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACAAAGAGGG
1 CAAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * *
1813 AAA-AATTCTCACGTACATAAGTTTTTAATTCAAATACTAAATCTTGATTACAAAATGACAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACT
* * * *
1877 ATTTAGACCAAATA-ATGCAATTTCTCGAGCATGGAATGTTC-AGAAAATTGCTCGTCA-GAATG
130 ATTTAGACCAAA-AGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCG-AAGGAATG
* *
1939 GATCTTCTAGAATACTTTAAGGAAC
192 GATCATCTTGAATACTTTAAGGAAC
** * * *
1964 CGTAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTT
1 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
2001 TACAAAGTTT
Statistics
Matches: 756, Mismatches: 125, Indels: 40
0.82 0.14 0.04
Matches are distributed among these distances:
212 30 0.04
213 11 0.01
214 132 0.17
215 144 0.19
216 108 0.14
217 148 0.20
218 160 0.21
219 1 0.00
220 22 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (216 bp):
CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACAAACTA
TTTAGACCAAAAGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
ATCTTGAATACTTTAAGGAAC
Found at i:2129 original size:142 final size:142
Alignment explanation
Indices: 1868--2142 Score: 401
Period size: 142 Copynumber: 1.9 Consensus size: 142
1858 GATTACAAAA
* *
1868 TGACAAACTATTTAGACCAAATAATGCAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGTC
1 TGACAAACTATTTAGACCAAATAATGCAATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGTA
* * * *
1933 AGAATGGATCTTCTAGAATACTTTAAGGAACCGTAGTTAAAAAATAACTTGTAAAAGTTTGACAA
66 AGAATGGATCTTCTAGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAA
1998 GTTTACAAAGTT
131 GTTTACAAAGTT
* * *
2010 TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTTG-A
1 TGACAAACTATTTAGACCAAATAATGCAATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGTA
* * *
2074 AGGAATGGAT-TGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGAC
66 A-GAATGGATCT-TCTAGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGAC
*
2138 TAGTT
129 AAGTT
2143 CAGATGTTCA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 2 0.02
142 116 0.98
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (142 bp):
TGACAAACTATTTAGACCAAATAATGCAATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGTA
AGAATGGATCTTCTAGAATAATTTAAGGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAA
GTTTACAAAGTT
Found at i:2312 original size:358 final size:356
Alignment explanation
Indices: 1653--2358 Score: 897
Period size: 358 Copynumber: 2.0 Consensus size: 356
1643 GTTTACAAAA
*
1653 TGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTTAAAAATTGCTCTTGG
1 TGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTAAAAAATTGC-CTTGG
* * * *
1718 GAATGGATTTTCGTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCATAAAAAGTTTGACAA
65 GAATGGATTGTCGTGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTCATAAAAAGTTTGACAA
** * * * *
1783 GTTCGAAAGTTTGTCCAAGAACAAAGAGGGAAAAATTCTCACGTACATAAGTTTTTAATTCAAAT
130 GTTCGAAAGTTCATCCAAGAACAAAGAGAGAAAAATTCTCACGTAAATAAGTTTTTAATTAAAAC
* * *
1848 ACTAAATCTTGATTACAAAATGACAAACTATTTAGACCAAATAATGCAATTTCTCGAGCATGGAA
195 ACTAAATCTTGATTACAAAATGACAAACTATTTAAACCAAATAATGCAATTCCCCGAGCATGGAA
* * * * * * *
1913 TGTTCAGAAAATTGCTCGTCAGAATGGATCTTCTAGAATACTTTAAGGAACCGTAGTTAAAAAAT
260 TGCTCAGAAAATTGCTCGTCAGAATAGATCGTCTAGAATACTTTAAGCAACAGAAGTTAAAAAAG
1978 AACTTGTAAAAGTTTGACAAGTTTACAAAGTT
325 AACTTGTAAAAGTTTGACAAGTTTACAAAGTT
* *
2010 TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTG-CTTGA
1 TGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTT-AAAAAATTGCCTTG-
* * * *
2074 AGGAATGGATTGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACT-AGT-AAAAGTTTGA
64 -GGAATGGATTGTCGTGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTCA-TAAAAAGTTTGA
* * *
2137 CTAGTTC-AGATGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACTTAAATAAGTTTTTAATT
127 CAAGTTCGA-AAGTTCATCCAAGAACAAAGAGAGAAA-AATTCTCACGTAAATAAGTTTTTAATT
* * * * * *
2201 AAAACACTGAAA-CTTGTTTATAAATTGACAAACTGTTTAAACCAAATGATGCGATTCCCCGAGC
190 AAAACACT-AAATCTTGATTACAAAATGACAAACTATTTAAACCAAATAATGCAATTCCCCGAGC
* * *
2265 ATGGATTGCTC-G-AAATTGCTCGAT-GGAACATAGATCGTCTTGAATACTTTAAGCAACAGAAG
254 ATGGAATGCTCAGAAAATTGCTCG-TCAG-A-ATAGATCGTCTAGAATACTTTAAGCAACAGAAG
*
2327 TTATAAAAGAACTTGTAAAAGTTTGACAAGTT
316 TTAAAAAAGAACTTGTAAAAGTTTGACAAGTT
2359 CGAAAGTTCG
Statistics
Matches: 299, Mismatches: 40, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
356 16 0.05
357 90 0.30
358 190 0.64
359 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (356 bp):
TGACAAACTATTTAGACAAAATGATGCGATTTCCCGAGCATGGAATGTTAAAAAATTGCCTTGGG
AATGGATTGTCGTGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTCATAAAAAGTTTGACAAG
TTCGAAAGTTCATCCAAGAACAAAGAGAGAAAAATTCTCACGTAAATAAGTTTTTAATTAAAACA
CTAAATCTTGATTACAAAATGACAAACTATTTAAACCAAATAATGCAATTCCCCGAGCATGGAAT
GCTCAGAAAATTGCTCGTCAGAATAGATCGTCTAGAATACTTTAAGCAACAGAAGTTAAAAAAGA
ACTTGTAAAAGTTTGACAAGTTTACAAAGTT
Found at i:2385 original size:216 final size:216
Alignment explanation
Indices: 1998--2505 Score: 637
Period size: 216 Copynumber: 2.3 Consensus size: 216
1988 AGTTTGACAA
* *
1998 GTTTACAAAGTTTGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAA
1 GTTTACAAA--TTGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTC-AA
* * * * * *
2063 AAATTGCTTGAAGGAATGGATTGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTA
63 AAATTGCTCGAAGGAATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTA
* * *
2128 AAAGTTTGACTAGTTCAGATGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACTTAAATAAGT
128 AAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
2193 TTTT-AATTAAAACACTGAAACTT
193 TTTTAAATTAAAACACTAAAACTT
* * * * * *
2216 GTTTATAAATTGACAAACTGTTTAAACCAAATGATGCGATTCCCCGAGCATGGATTGCTC-GAAA
1 GTTTACAAATTGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAA
* * *
2280 TTGCTCGATGGAACATAGATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTTGTAA
66 TTGCTCGAAGG-A-ATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTAA
*
2345 AAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAA-ACAAGAGAGAAACAATTCTCACGTAAATAAG
129 AAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACA-AAGAGAGAAACAATTCTCACGTAAATAAG
* *
2408 TTTTTAAAAATTCAAAGACTAAAACTT
192 TTTTT--AAATTAAAACACTAAAACTT
* * * ** *
2435 GTTTACAAAATGACAAACTATTTAGACTAAATGATGCGATTTCCTGAGCATGGAATTTTGAAAAA
1 GTTTACAAATTGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAA
2500 TTGCTC
66 TTGCTC
2506 TTGGGAATGG
Statistics
Matches: 246, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 12 0.05
215 3 0.01
216 149 0.61
218 8 0.03
219 65 0.26
220 9 0.04
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
GTTTACAAATTGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGCTCAAAAA
TTGCTCGAAGGAATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTAAAA
GTTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAAATTAAAACACTAAAACTT
Found at i:2605 original size:75 final size:74
Alignment explanation
Indices: 2458--2605 Score: 190
Period size: 75 Copynumber: 2.0 Consensus size: 74
2448 CAAACTATTT
* ** *** * *
2458 AGACTAAATGATGCGATTTCCTGAGCATGGAATTTTGAAAAATTGCTCTTGGGAATGGATCTTTT
1 AGACCAAATGATGCGATTTCCTGAGCATGGAATTTCAAAAAATTGCTCAAAGGAATGGATCATCT
2523 TGAATACTA
66 TGAATACTA
*
2532 AGACCAAATGATGTGATTT-CTCGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCAT
1 AGACCAAATGATGCGATTTCCT-GAGCATGGAAT-TTCAAAAAATTGCTCAAAGGAATGGATCAT
2596 CTTGAATACT
64 CTTGAATACT
2606 TGAGGAACCG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
73 2 0.03
74 28 0.44
75 33 0.52
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.32
Consensus pattern (74 bp):
AGACCAAATGATGCGATTTCCTGAGCATGGAATTTCAAAAAATTGCTCAAAGGAATGGATCATCT
TGAATACTA
Found at i:2902 original size:214 final size:215
Alignment explanation
Indices: 2532--4031 Score: 1659
Period size: 216 Copynumber: 7.0 Consensus size: 215
2522 TTGAATACTA
* * * * * *
2532 AGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATC
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCAAAGGAATGGATCGTC
* * * * *
2597 TTGAATAC-TTGAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTTG
66 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAGAAGTTCG
* *
2661 TCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
131 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
*
2726 TTACGAATGACAAACTATTT
196 TTACAAATGACAAACTATTT
* * * * *
2746 AGACCAAATGATGCGA-TTCCCGAGCATGGAATGTTTGGAAAATTTCACGAAGGAATGAATTGTC
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCAAAGGAATGGATCGTC
** * * *
2810 TTGAATACTTTAAGGAAGGGAAGTTATAAAAGATCACCTAAAAGTTTGACAAGTTTAGAAGTTTG
66 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAGAAGTTCG
*
2875 T-CAATGAACCAAGAGAGAAATAATTCTCACGTAAATAAG--TTT--TT-AAAGACCAAAACTTG
131 TCCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTG
2934 TTTACAAAATGACAAACTATTT
195 TTTAC-AAATGACAAACTATTT
* *
2956 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTT-GAAAGATTGCTCAAAGGAATGGATTGT
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAA-ATTTCTCAAAGGAATGGATCGT
* * * *
3020 CTTGAATACTTTGAGGATCCGAAGTTACAAAAGAACTA-GTAAAAGTTTGACAAG-TTCGAAAGT
65 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-ACGTAAAAGTTTGACAAGTTTAG-AAGT
* * * * *
3083 TCATCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGAACAAAACT
128 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
**
3148 TGCCTACAAATGACAAACTATTT
193 TGTTTACAAATGACAAACTATTT
* ** * * *
3171 AGACCAAATGATACGATTTCTTGAGCATGGAATG-TTCGAAAATTTTCTCTAAGGAATGGATCTT
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAA-TTTCTCAAAGGAATGGATCGT
* * * * * * * * *
3235 ATTGGATACTTTAAGGAATCGAAGTTAAAAAAATAACTCGTAAAAATTTGACAAG-TTCGAAAAT
65 CTTGAATACTTTAAGGAACCGAAGTT-ATAAAAGAACACGTAAAAGTTTGACAAGTTTAG-AAGT
** * *
3299 TCGTCCAAGAATAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAAACCAAAACT
128 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
*
3364 TGTTTTCAAATGACAAACTATTT
193 TGTTTACAAATGACAAACTATTT
** * ** * *
3387 AGACCAAATGATGTAATTTCCCGAGCATGCAATGTTCGGAAAATTTCTCGAAGGAATGGATCGAC
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCAAAGGAATGGATCGTC
** * * * * *
3452 TTGAATACTTTAAGGAATTGAAGTTATAATAGATCTCCTAAAAGTTTGACAAGTTTGGAAGTTCG
66 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAGAAGTTCG
* * * ** *
3517 TCCATGAACC-A-AGAGAAAGAATTCTCACATAAATAAGTTTTTAATTTTAAGACTAAAACTTGT
131 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
*
3580 TTACGAAATGATAAACTATTT
196 TTAC-AAATGACAAACTATTT
* * * * * * * *
3601 AGAGCAAAAGATGCGATTTCCCAAGCATGCAATGTTCA-AATAATTGCTCGAAGGAATGAATCGT
1 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAA-AATTTCTCAAAGGAATGGATCGT
* * *
3665 CTTGAATACTTTAAGGTACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTT
65 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAG-AAGTT
* * * ***
3729 CGTCCAAGAACCAAGAGAGAAACAATTCACATGTAAATAAGTTTTTAATTCAAAGACTAATTTTT
129 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA--AAC
*
3794 TTTTTTACAAAATGACAAACTATTT
192 TTGTTTAC-AAATGACAAACTATTT
* * * * * * * *
3819 AGATCAAATGATGCGATTTCCCGAATC-TGGAAGGTTCAAAAAATTGCTCAAAAGGATTGAATCG
1 AGACCAAATGATGCGATTTCCCG-AGCATGGAATGTTTAGAAAATTTCTC-AAAGGAATGGATCG
* * * * * **
3883 TCTTGAATACTTTAAGGAACCAAATTTATATAAGAACACGTACAAGTTTAACAAGTGCAGAAGTT
64 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAGAAGTT
* ** * *
3948 CATCCAAGAACCAAGAGAGAAACAATTAACGCGTAAATAAGTTTTTAATTTAAAGACCAAAACTT
129 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT
*
4013 GTTTACTAAATGACTAACT
194 GTTTAC-AAATGACAAACT
4032 GATACGAGTT
Statistics
Matches: 1094, Mismatches: 162, Indels: 57
0.83 0.12 0.04
Matches are distributed among these distances:
209 20 0.02
210 40 0.04
211 121 0.11
212 6 0.01
213 106 0.10
214 230 0.21
215 127 0.12
216 237 0.22
217 24 0.02
218 59 0.05
219 123 0.11
220 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCAAAGGAATGGATCGTC
TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTGACAAGTTTAGAAGTTCG
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGT
TTACAAATGACAAACTATTT
Found at i:5847 original size:216 final size:216
Alignment explanation
Indices: 5448--11884 Score: 6324
Period size: 216 Copynumber: 29.6 Consensus size: 216
5438 GTTCTATATC
* * * ** * *
5448 ATTTAGACCAAATGATG-GAATTTCTCAAGCATAGAATGTTC-GAAAAATTAAT-TAGACGAATG
1 ATTTAGACCAAATGATGCG-ATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGA-AGGAATG
* * *
5510 GATCGTCTTGAATACTTTAAGGAAGCGAAGTTAAAAAAGAACTCGTAAAAGTTTGAAAAGTTCGA
63 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* * ** * *
5575 AAGTTCGTCCATGAACCAAGAGAGAAACTGTTCTCACGTAAATAAGCTTTTAATTCAAAGACTAA
128 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
5640 AACTTGTTTACAAAAAGACAAGCT
193 AACTTGTTTACAAAATGACAAACT
* * * * *
5664 ATTTATACCATATGATGCGATTTCCCAAGCATGGAATATTCAGAAAATTGCTCGAAGAAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* ** * * *
5729 CGTCTTGAATACTTTAAGTATTCGAAGTTACAAAAGAACTAGTAAAAGTTTAACAAGTTC-AGAA
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AA
*
5793 GTTCGTCCAAGAACAAAGAGAGAAACACTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
*
5858 CTTGTTTACAAAATGACAAATT
195 CTTGTTTACAAAATGACAAACT
* *
5880 ATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * * *
5945 CTTGTTGAATACTTTAAGGAATCGAAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCAAAAT
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * *
6010 TTTGTCCAATAACAAAGAGAG--ACAATTCTCATGTAAATAAGTTTTTAATTCAAACACCAAAAC
131 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
6073 TTGTTTACAAAATGACAAACT
196 TTGTTTACAAAATGACAAACT
* * * *
6094 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTACTCTAAAGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * * * *
6159 CTTATTGAATATTTTAAGGAACCAAAGTTAAAAAATAAGTTGTAAAAGTTTCACAAGTTCGAAAG
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * *
6224 TTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-AAATGGCTAAAA
131 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GACCAAAA
* *
6288 CTTCTTTACAAAATGACTAACT
195 CTTGTTTACAAAATGACAAACT
* * * *
6310 ATTTAGACCAAATGATGCAATTTACCAAGCATGGAAAGTTCAGAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* *
6375 CGTCTTGAATACTTTAAGCAACCGAAGTTATAAAAGAACTCGTAAAAGATTGACAAGTTCGAAAG
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * ** *
6440 TTCGTCCAAGAACCAAGAGAGAAATAATTCACACGTAAATAAGTTTTTAATTCAAAGATTAAAAT
131 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
*
6505 TTTTTTACAAAATGACAAACT
196 TTGTTTACAAAATGACAAACT
* * * *
6526 ATTTAGACCAAATGATGCGATTTCCTGATCGTGGAATGTTCAGAAAATTGCTCGAAAGGAATGAA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCG-AAGGAATGGA
* * * * * * * *
6591 ACATCTTGAATACTTTAAGGAACCAAATTTA-AATAAGAACTCATACAAGTTTAACAAGTGCGAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * *
6655 AGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTAATTCAAAGACCAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
6720 ACTTGTTTGCAAAATGACAAACT
194 ACTTGTTTACAAAATGACAAACT
* * * *
6743 ATTTAGACCATAGGATGCGATTTCTCGAGCAT-G---GTTC-GAAAAGTTGCGT-GAAGGATTGG
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAA-TTGC-TCGAAGGAATGG
* * * * *
6802 ATCGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTTGTAAAAGTTTGACAACTTCG
64 ATCGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * * *
6867 AAAGTTCATCCATGAACAAAGAGAGAAACAATTCTAAATGTTAATAAGATTTTAATTCGAAGACC
127 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACC
*
6932 AAAACTTGTTTACAAATTGACAAACT
191 AAAACTTGTTTACAAAATGACAAACT
* * * * * * **
6958 GTTTAGACCAAAAGATGTGA-TTCCGTGAGCATGGACTGCTTGA-AAAATTGCTCGGTGGAATAT
1 ATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAATG-TTCAGAAAATTGCTCGAAGG-A-AT
** * *
7021 AAATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
62 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * *
7086 AAAGTTCATCCAAGAACCAAGAGAGAAACAATTTTTTACGTAAATAAGTTTTTAATTTAAAAGAC
127 AAAGTTCGTCCAAGAACAAAGAGAGAAACAA-TTCTCACGTAAATAAGTTTTTAA-TTCAAAGAC
* * *
7151 TAAGACTTGTTTATAAAATGACAAACT
190 CAAAACTTGTTTACAAAATGACAAACT
* * ** ** *
7178 ATTTAGATCAAATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATAACTCGTGGGAATAGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * * *
7243 CTTCATGGATACTTTAAGGAACCGAAGTTAAAAAATAACTCGCAAAAGTTTGACAAGTTTGGAAG
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * *
7308 TTCATCCAAGAACAAAGAGAGAAACAACTCTCATGTAAA-AATGATTTTAATTCAAAGACCAAAA
131 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACCAAAA
7372 CTTGTTTACAAAATGACAAACT
195 CTTGTTTACAAAATGACAAACT
**
7394 ATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * * *
7458 TCATCTTGAATACTTTACGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * * *
7523 GTTCGTCCAAGAATAAAGAAAGAAAAAATCCTCACGTAAATAAGTTTATAATTCAAAGACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
** *
7588 CTTGTTTATGAAATGATAAACT
195 CTTGTTTACAAAATGACAAACT
* * * * *
7610 ATTTAGACCAAATGATGCGATTTCCTGAGTAAGGAATGTTC-GAAAAATAGCTCGAAGGAATGAA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * ** * *
7674 TCATCTTGAATACTTAAAGGATGCGAAGTTATAAAAGATCTCCTAAAAGTTTGACAAGTTC-AGA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-A
* * *
7738 AGTTCATCCAAGAACAAAGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTCAAAGACCCAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
7803 ACTTGTTTACAAAATGACAAACT
194 ACTTGTTTACAAAATGACAAACT
7826 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * ** * * *
7890 TCTTCTTGAATACTTTAAGTATTCGAAGTTATAAAAGAACTAGTGAAAGTTTGACAAGTTCGGAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* *
7955 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCATGT-AATAAGTTTTTAATTCAAAGACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
8019 CCTATTTACAAATTGACAAACT
195 CTTGTTTACAAAATGACAAACT
* * * * *
8041 GTTTAGACCAAATGATGCGATTCCCCGAGCATGGATTGTT-TGAAAAATTGATC-AATGGAATAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAA-GG-A-AT
* * * * **
8104 AGATCATGTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
62 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * *
8169 AAAGTTCGTCCAATAACTAAGAGAGAAACAATTCTCACGTACATAAGTTTTTAATTCAAAGACTA
127 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*** *
8234 AAACTAAATTACAAAATGACATACT
192 AAACTTGTTTACAAAATGACAAACT
* * * **
8259 ATTTATACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGTGGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * * *
8324 CTTCTGGAATACTTTAAGGAACCAAAGTTAAAAAATAACTCGTAAAAGTTTGAGAGGTTCGGAAG
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * *
8389 TTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAAC
131 TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
* * *
8454 TTGTCTACAAAATGAAAAATT
196 TTGTTTACAAAATGACAAACT
* * *
8475 ATTTATACCAAATGATGCGATTTCCCGAGCATGGAATGATC-GAAAAATTGCTCAAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * * *
8539 TCGTCTTGAAAACTTTAAGGAAGCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTCGAAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * * *
8604 GTTCGTACATGAACCAAGAGAGAAACAATTCTCACGTTAATAAGTTTTTAATTCAAAGACTAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
8669 CTTTTTTAGAAAAAGACAAACT
195 CTTGTTTACAAAATGACAAACT
* * * * ** * *
8691 ATGTATACCATATGTTTTGATTTCCCGAGCGTGGAATGTTC-GAAAAATTGCTCGAAGGAAGGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * * * * * *
8755 TCGTCTTGAATGCTTTAAGGATCTGAAGTTATAAAAGAACTAGTAAAAATTTAACAAGTTCGGAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * * * * * * *
8820 TTTGGTCAAAGAACTAAGTGAGAAACAATTCTTACGTAAAAAAGTTTATAATTCAAATACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
*
8885 CTTATTTACAAAATGACAAACT
195 CTTGTTTACAAAATGACAAACT
* * **
8907 A-TTAGACCAAATGATGCGATTTCTCGAGCATCGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* *
8971 CGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-AGAA
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AA
* * *
9035 GTTCATCCAAGAACAAAGTGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
9100 CTTGTTTACAAAATGGA-AAACT
195 CTTGTTTACAAAAT-GACAAACT
*
9122 ATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
*** * * * *
9186 TTACCTTGAATACTTTAAGTATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
**
9251 GTTCACCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
130 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
** *
9316 CTTGTTTGTAAATTGACAAACT
195 CTTGTTTACAAAATGACAAACT
* * * * * * *
9338 GTTTAGACCAAATAATGCGA-TTCCCTGAGCATGGACTGCTCAAAAAATTGCTCGATGGAATATA
1 ATTTAGACCAAATGATGCGATTTCCC-GAGCATGGAATGTTCAGAAAATTGCTCGAAGG-A-ATG
* ** *
9402 GATCGTCTTGAATACTTTAAGTAACAAAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGA
63 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* * * * *
9467 AAGTTCGTCCATGAACTAAGCGAGAAACAATTCTCAAGGAAATAAGTTTTTAATTCAAAGACCAA
128 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
*
9532 AACTTGTTTACGAAATGACAAACT
193 AACTTGTTTACAAAATGACAAACT
* * * * * * * * *
9556 GTTTAGACAAAATGATTCGATTTCCCGAACGTGGAATGTTCAAAAAAATTTCTTGAAAGGAATGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCG-AAGGAATGG
* * * * * * * * *
9621 ATCATCTTGAATACTTTAAGGAGCCAAATTTATATAAGAACTCGTATAAGTTTAACAAGTGCAAA
64 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * * * *
9686 AGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAA-TCAAAGACTAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
9750 ACTTGTTTGCAAAATGACAAACT
194 ACTTGTTTACAAAATGACAAACT
* * * * * * * * *
9773 ATTTATACCATAGGATACGATTTCCTGAGCAT-G---GTTCGGAAAGTTGCACGAAGGATTGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * *
9834 TGTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAG
66 CGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * * * * * * *
9899 AGTACATCCATGAACCAAGGGAGAAACAATTCTCAAGTTAATAAGATTTTAATTCAAAGACCAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* *
9964 ACTTGTTTACTAAATGACGAACT
194 ACTTGTTTACAAAATGACAAACT
* * *
9987 ATTTAGACCAAATGATGCTATTTCCCTAGCATGGAATTTTC-GAAAAATTGCTCGAAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* ** *
10051 TCGTCTTAAATACTTTAAGGATTCGAAGTTATAAAAGAATTCGTAAAAGTTTGACAAGTTC-AGA
65 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-A
* * * *
10115 AGTTGGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGACTAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
10180 ACTTGTTTACAAAAATGACAAACT
194 ACTTGTTTAC-AAAATGACAAACT
* * * * *
10204 ATTTAGACAAAATGATGAGATTTCTCGAGCATGGAATGTTC-GAAAAATTGTTCGTAGGAATGGA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGA
* * * * *
10268 TC-TTTGTGAATACTTTAGGGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGACAAGTTCGAA
65 TCGTCT-TGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * * **
10332 AGTTTGTCCAAGAACAAAGAGAGAAAAAATTCTCACGTAAAAAAGTTTTTAATTCAAAGATTAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
**
10397 ACTTAATTACAAAATGACAAACT
194 ACTTGTTTACAAAATGACAAACT
* * *
10420 ATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCG-TGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * *
10484 CTTC-TGAAATACTTTAAGGAACCAAAGTTAAAAAATAATTCGTCAAAGTTTGACATGTTCGAAA
66 CGTCTTG-AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AA
* * * * * * ***
10548 AGTTTAACAATCTATTTAGATCAAATGA-TG---CAATT-TCTCG-AGCATGGAATGTTCGAAAA
129 AG-TT--C-GTCCA---AGAACAAA-GAGAGAAACAATTCTCACGTA-AAT--AA-GTT--TTTA
* ** *** ** ** * *
10607 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGT
180 A-T--TC-AAAG-A-CCA-AAACTTGTTTAC-AAAATGA--CAAACT
* * ** * *** ** * ** *** *
10654 -TATAAAAGAACT-AGTAAAAGTTTAACAAGTTCA--GAA-GTTC-GTCCAAGAAC-CAAGAGAG
1 ATTTAGACCAAATGA-TGCGA-TTTCCCGAG--CATGGAATGTTCAG-AAAATTGCTCGA-AG-G
* * * * **** *
10712 AAAGAAT--TC-TCACA-A-TATAAGTTTTC-AA-TTCA-AAGACCAGAACTTGTTTACAAA--T
59 AATGGATCGTCTTGA-ATACTTTAAGGAACCGAAGTT-ATAA-A--AGAACTCG--TA-AAAGTT
** * * * * * * ** *
10767 TGACAAACT-G---TTTAGACCAGATGGAACATAGATCGTCTTGAATACTTTAAGTAACAGAAGT
116 TGACAAGTTCGAAAGTTCGTCCA-A--GAACAAAGA--G---AGAA-AC---AA-T-TCTCACG-
** * * * *
10828 TATAA-AAGTACTCGTAAAAGTTTGACAAGTTCGTAAAACTTATTTACAAAATG----ACT
166 TA-AATAAGT--T--TTTAA--TTCA-AAG-AC-CAAAACTTGTTTACAAAATGACAAACT
* * * *
10884 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGAAAAGTTCAG-AAATTGCTCGAAGGAAT
1 -A-T-TTA-GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAAT
* * *
10948 GGATCGTCATGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTG
62 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
* * * * * * *
11013 GAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCGCATGTAAATAAGTTTTTAATTCGAAGACTA
127 AAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*
11078 AAACTT-TTTCATAAAATGACAAACT
192 AAACTTGTTT-ACAAAATGACAAACT
* * *** *
11103 ATTTAGGCCAAATGATCCGATTTCCCGAATGTGGAATGTTC-GAAAAATTGCTCAAAAGGAATGG
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTC-GAAGGAATGG
* * * * * * *
11167 ATCGTCTTGAATACTTTAAGGAACCTAATTTATATAAGAACTCGTAGAAGTTTAACAAGTACGGA
64 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * * * * *
11232 TGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAATCCAAAGACCAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
*
11297 ACTTGTTTGCAAAATGACAAACT
194 ACTTGTTTACAAAATGACAAACT
** * * ** * *
11320 ATTTAGACCGTAGGATGCAATTTCCCGAGCAT-G---GTTCAGAAAGCTGCACGAAGGATTGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * *
11381 CATCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
66 CGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* * * * * * * *
11446 AGTTCATCCATGAACCAAGAGAGAAACAATTCTTAGGTTAATAAGATTTTAATTCAAAAACCAAA
129 AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
11511 ACTTTTTTATAAATTGACAAACT
194 ACTTGTTTACAAAATGACAAACT
* * * * * * * * *
11534 GTTTAGACCAAAAGATGAGATTCCCCAAGCATGGACTGCTC-GAAAAATTGCTCGATGGAACATA
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGG-A-ATG
* * *
11598 GATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGT
63 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* * *
11663 AAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAA
128 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
*
11728 AACTTGATTACAAAATGACAAACT
193 AACTTGTTTACAAAATGACAAACT
* * ** *
11752 ATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGTGGGATTGGAT
1 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
* * * * * * *
11817 CTTCTAGAATACTTTAAGGAACCAAAGTTAAAAAATAACTTGTAAAAGTATGACAAGTTCGGAAA
66 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAA
11882 GTT
130 GTT
11885 TGACAAACTA
Statistics
Matches: 5140, Mismatches: 895, Indels: 371
0.80 0.14 0.06
Matches are distributed among these distances:
211 28 0.01
212 72 0.01
213 99 0.02
214 450 0.09
215 463 0.09
216 2126 0.41
217 702 0.14
218 663 0.13
219 117 0.02
220 113 0.02
221 29 0.01
222 5 0.00
223 12 0.00
224 17 0.00
225 4 0.00
226 1 0.00
227 6 0.00
228 3 0.00
229 7 0.00
230 8 0.00
231 16 0.00
232 17 0.00
233 39 0.01
234 34 0.01
235 32 0.01
236 27 0.01
237 17 0.00
238 11 0.00
239 18 0.00
240 2 0.00
241 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGAT
CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
TTGTTTACAAAATGACAAACT
Found at i:8297 original size:865 final size:860
Alignment explanation
Indices: 5448--11884 Score: 6428
Period size: 865 Copynumber: 7.4 Consensus size: 860
5438 GTTCTATATC
* * ** * * *
5448 ATTTAGACCAAATGATG-GAATTTCTCAAGCATAGAATGTTCGAAAAATTAATTAGACGAATGGA
1 ATTTAGACCAAATGATGCG-ATTTCCCAAGCATGGAATGTT-GAAAAATTGCTCA-AGGAATAGA
* *
5512 TCGTCTTGAATACTTTAAGGAAGC-GAAGTTAAAAAAGAACTCGTAAAAGTTTGAAAAGTTCGAA
63 TCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
** *
5576 AGTTCGTCC-ATGAACCAAGAGAGAAACTGTTCTCACGTAAATAAGCTTTTAATTCAAAGACTAA
127 AGTTCGTCCAAT-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAA
* * * * * * *
5640 AACTTGTTTACAAAAAGACAAGCTATTTATACCATATGATGCGATTTCCCAAGCATGGAATATTC
191 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * ** * *
5705 AGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGTATTCGAAGTTACAAAAGAACT-
256 A-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* *
5769 AGTAAAAGTTTAACAAGTTC-AGAAGTTCGTCCAAGAACAAAGAGAGAAACACTTCTCACGTAAA
320 A-TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
*
5833 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGC
383 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
5898 AATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAAG
448 GATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * * * * * *
5963 GAATCGAAGTTAAAAAATAACTTGTAAAAGTTTGACAAGTTCAAAATTTTGTCCAATAACAAAGA
513 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGA
* *
6028 GAG--ACAATTCTCATGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAA
578 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * *
6091 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTACTCTAAAGAATG
643 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * * * * *
6156 GATCTTATTGAATATTTTAAGGAACCAAAGTTAAAAAATAAGTTGTAAAAGTTTCACAAGTTCGA
708 GATCTTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* *
6221 AAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-AAATGGCTA
773 AAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAAA-GACCA
* *
6285 AAACTTCTTTACAAAATGACTAACT
836 AAACTTATTTACAAAATGACAAACT
* * * * *
6310 ATTTAGACCAAATGATGCAATTTACCAAGCATGGAAAGTTCAGAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTGA-AAAATTGCTC-AAGGAATAGAT
* * *
6375 CGTCTTGAATACTTTAAGCAACCGAAGTTATAAAAGAACTCGTAAAAGATTGACAAGTTCGAAAG
64 CGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * * *
6440 TTCGTCCAAGAACCAAGAGAGAAATAATTCACACGTAAATAAGTTTTTAATTCAAAGATTAAAAT
129 TTCGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAAC
* * *
6505 TTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CTGATCGTGGAATGTTCAG
194 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCA-
* * *
6569 AAAATTGCTCGAAAGGAATGAAACATCTTGAATACTTTAAGGAACCAAATTTA-AATAAGAACTC
257 AAAATTGCTCG-AAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA-AAGAACTC
* * * * * *
6633 ATACAAGTTTAACAAGTGCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGGAAATA
320 ATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
* * *
6698 AGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCATAGGATGCGA
385 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
6763 TTT-CTCGAGCAT-G---GTTCGAAAAGTTGCGT-GAAGGATTGGATCGTCTTGAATACATTAAG
450 TTTCCT-GAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
6822 GAACCAAAAAGCTATAAAAGAACTTGTAAAAGTTTGACAACTTCGAAAGTTCATCCATGAACAAA
513 GAACC--AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAA
* * * * * *
6887 GAGAGAAACAATTCTAAATGTTAATAAGATTTTAATTCGAAGACCAAAACTTGTTTACAAATTGA
576 GAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* * * * * **
6952 CAAACTGTTTAGACCAAAAGATGTGA-TTCCGTGAGCATGGACTGCTT-GAAAAATTGCTCGGTG
640 CAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAATG-TTCGAAAAATTGCTCGAAG
** * *
7015 GAATATAAATCGTCTTGAATACTTTAAGCAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
703 G-A-ATGGATCTTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * *
7079 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTTTTTACGTAAATAAGTTTTTAATTT
765 AAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAA-TTCTCACGT-AATAAGTTTTTAA-TT
* * * * *
7144 AAAAGACTAAGACTTGTTTATAAAATGACAAACT
827 CAAAGACCAAAACTTATTTACAAAATGACAAACT
* * ** **
7178 ATTTAGATCAAATGATGCGATTTCCCAAGCATGGAATGTTCAGAAAATAACTCGTGGGAATAGAT
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTGA-AAAATTGCTC-AAGGAATAGAT
* * * * * * * * *
7243 CTTCATGGATACTTTAAGGAACCGAAGTTAAAAAATAACTCGCAAAAGTTTGACAAGTTTGGAAG
64 CGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * * * * *
7308 TTCATCCAAGAACAAAGAGAGAAACAACTCTCATGTAAA-AATGATTTTAATTCAAAGACCAAAA
129 TTCGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTTAATTCAAAGACTAAAA
*
7372 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCGA
193 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-A
*
7437 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTACGGAACCAAAGTTATAAAAGAACTCAT
257 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCAT
* * * *
7502 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAATAAAGAAAGAAAAAATCCTCACGTAAATAAG
322 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* ** *
7567 TTTATAATTCAAAGACCAAAACTTGTTTATGAAATGATAAACTATTTAGACCAAATGATGCGATT
387 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * **
7632 TCCTGAGTAAGGAATGTTCGAAAAATAGCTCGAAGGAATGAATCATCTTGAATACTTAAAGGATG
452 TCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * *
7697 CGAAGTTATAAAAGATCTCCTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACAAAGAGAG
517 CAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAG
* *
7761 AAACATTTCTCACGTAAATAAGTTTTTAATTCAAAGACCCAAACTTGTTTACAAAATGACAAACT
581 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
7826 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
646 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* ** * * * *
7891 CTTCTTGAATACTTTAAGTATTCGAAGTTATAAAAGAACTAGTGAAAGTTTGACAAGTTCGGAAG
711 CTTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* *
7956 TTCATCCAAGAACAAAGAGAGAAACAATTCTCATGTAATAAGTTTTTAATTCAAAGACCAAAACC
776 TTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAAAGACCAAAACT
*
8021 TATTTACAAATTGACAAACT
841 TATTTACAAAATGACAAACT
* * * * *
8041 GTTTAGACCAAATGATGCGATTCCCCGAGCATGGATTGTTTGAAAAATTGATCAATGGAATATAG
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG-TTGAAAAATTGCTCAA-GG-A-ATAG
* * * *
8106 ATCATGTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
62 ATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* *
8171 AGTTCGTCCAATAACTAAGAGAGAAACAATTCTCACGTACATAAGTTTTTAATTCAAAGACTAAA
127 AGTTCGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAA
*** * *
8236 ACTAAATTACAAAATGACATACTATTTATACCAAATGATGCGATTTCTCGAGCATGGAATGTTCA
192 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-
** * * * * *
8301 AAAAATTGCTCGTGGGAATGGATCTTCTGGAATACTTTAAGGAACCAAAGTTAAAAAATAACTCG
256 AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCA
* * * * *
8366 TAAAAGTTTGAGAGGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAAAAA
321 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
8431 GTTTATAATTCAAAGACCAAAACTTGTCTACAAAATGAAAAATTATTTATACCAAATGATGCGAT
386 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * *
8496 TTCCCGAGCATGGAATGATCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAAAACTTTAAGGAA
451 TTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * *
8561 GCAAAGTTATAAAAGAACTCGAAAAAGTTTGACAAGTTCGAAAGTTCGTACATGAACCAAGAGAG
516 CCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAG
* * * * *
8626 AAACAATTCTCACGTTAATAAGTTTTTAATTCAAAGACTAAAACTTTTTTAGAAAAAGACAAACT
581 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * ** * *
8691 ATGTATACCATATGTTTTGATTTCCCGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAAGGGAT
646 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * ** * * * * *
8756 CGTCTTGAATGCTTTAAGGATCTGAAGTTATAAAAGAACTAGTAAAAATTTAACAAGTTCGGAAT
711 CTTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
** * * * * * * *
8821 TTGGTCAAAGAACTAAGTGAGAAACAATTCTTACGTAAAAAAGTTTATAATTCAAATACCAAAAC
776 TTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAAAGACCAAAAC
8886 TTATTTACAAAATGACAAACT
840 TTATTTACAAAATGACAAACT
* * * * *
8907 A-TTAGACCAAATGATGCGATTTCTCGAGCATCGAATGTTTGGAAAATTGCTCGAAGGAATGGAT
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG-TTGAAAAATTGCTC-AAGGAATAGAT
*
8971 CGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTC-AGA
64 CGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-A
* * * * * *
9034 AGTTCATCCAAGAACAAAGTGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAA
127 AGTTCGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAA
9099 ACTTGTTTACAAAATGGA-AAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
192 ACTTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
* * * * *
9163 GAAAAATTGCTCGAAGGAATGGATTACCTTGAATACTTTAAGTATCCGAAGTTATAAAAGAACT-
256 -AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* **
9227 AGTAAAAGTTTGACAAGTTTGAAAGTTCACCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAT
320 A-TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAT
** * * *
9292 AAGTTTTTAATTCAAAGACCAAAACTTGTTTGTAAATTGACAAACTGTTTAGACCAAATAATGCG
384 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * * *
9357 ATTCCCTGAGCATGGACTGCTCAAAAAATTGCTCGATGGAATATAGATCGTCTTGAATACTTTAA
449 ATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAA
* * * * *
9422 GTAACAAAAGTTATAAAAGAACTCGTCAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAACTAAG
512 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAG
* * * *
9487 CGAGAAACAATTCTCAAGGAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACGAAATGACA
577 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * * *
9552 AACTGTTTAGACAAAATGATTCGATTTCCCGAACGTGGAATGTTCAAAAAAATTTCTTGAAAGGA
642 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCG-AAGGA
* * * * * * * *
9617 ATGAATCATCTTGAATACTTTAAGGAGCCAAATTTATATAAGAACTCGTATAAGTTTAACAAGTG
705 ATGGATCTTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * *
9682 CAAAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAA-TCAAAGAC
770 CGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCA-CGTAATAAGTTTTTAATTCAAAGAC
* * *
9746 TAAAACTTGTTTGCAAAATGACAAACT
834 CAAAACTTATTTACAAAATGACAAACT
* * * * ** * * * * * * *
9773 ATTTATACCATAGGATACGATTTCCTGAGCATGG--T-TCGGAAAGTTGCACGAAGGATTGGATT
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTGAAAAATTGCTC-AAGGAATAGATC
* * * *
9835 GTCTTGAATACATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAGA
65 GTCTTGAATACTTTAAGGAA-C-AGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * * * * *
9900 GTACATCC-ATGAACCAAGGGAGAAACAATTCTCAAGTTAATAAGATTTTAATTCAAAGACCAAA
128 GTTCGTCCAAT-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAA
* * * * * *
9964 ACTTGTTTACTAAATGACGAACTATTTAGACCAAATGATGCTATTTCCCTAGCATGGAATTTTCG
192 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-
* * ** * * *
10029 AAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGATTCGAAGTTATAAAAGAATTCG
256 AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCA
* *
10094 TAAAAGTTTGACAAGTTC-AGAAGTTGGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATA
321 TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
* * * *
10158 ATTTTTTAATTCAAAGACTAAAACTTGTTTACAAAAATGACAAACTATTTAGACAAAATGATGAG
385 AGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
10223 ATTT-CTCGAGCATGGAATGTTCGAAAAATTGTTCGTAGGAATGGATC-TTTGTGAATACTTTAG
449 ATTTCCT-GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCT-TGAATACTTTAA
* * * * *
10286 GGAACCGAAGTTAAAAAATAACTCATAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACAAAG
512 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAG
* * ** **
10351 AGAGAAAAAATTCTCACGTAAAAAAGTTTTTAATTCAAAGATTAAAACTTAATTACAAAATGACA
577 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * *
10416 AACTATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-AGAAAATTGCTCG-TGGAA
642 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * * *
10479 TGGATCTTC-TGAAATACTTTAAGGAACCAAAGTTAAAAAATAATTCGTCAAAGTTTGACATGTT
706 TGGATCTTCTTG-AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * *
10543 CGAAAAGTTTAACAATCTATTTAGATCAAATGA-TG---CAATTTCTCGA-G-CATGGAATGTTC
770 CG-AAAG-TT--C-ATCCA---AGAACAAA-GAGAGAAACAA-TTCTC-ACGTAAT--AA-GTT-
*** * ** * * *
10602 GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACT
820 -TTTAA-T--TC--A--AA--GA-C--C---AAAAC-TT-A-TTTACAAA---ATGACA-AACT
** *** * * * *** ** *
10666 AGTAAAAGTTTAACAAG-TTCAGAAGTTCGTCCAAG-AACCAA-GAGAGAAAGAATT-CTC-A-C
1 A-T-TTAGACCAA-ATGATGC-G-ATTTC--CCAAGCATGGAATG-TTGAAA-AATTGCTCAAGG
* * ** * * * * * * * *
10725 AATATA-AGT-TTTCA-A-TTCAAAGACCAGAACTTGTTTACA-AA-TTG-ACAAACTGTTTAGA
57 AATAGATCGTCTTGAATACTTTAAGGAACAGAAGTT-ATAAAAGAACTCGTA-AAA--GTTT-GA
* * * * * * * * *** *
10783 CCAGATGGAACATAGATCGTCTTGAAT-ACTTTAAGTAACAGAAGTTATAAAAGTACTCGT-AA-
117 CAAGTTCG-A-A-AGTTCGTC--CAATAAC--CAAG--AGAGAA---ACAATTCT-CACGTAAAT
* * * *
10845 AAG--TTTGA--C-AAGTTCGTAAAACTTATTTACAAAATGACTAACTATTTAGACCAAATGATG
169 AAGTTTTTAATTCAAAG-AC-TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * *
10905 CGATTTCCCAAGCATGAAAAGTTCAGAAATTGCTCGAAGGAATGGATCGTCATGAATACTTTAAG
232 CGATTTCTCGAGCATGGAATGTTCAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * * * * *
10970 GAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGA
297 GAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGA
* * * * * *
11035 GAGAAATAATTCGCATGTAAATAAGTTTTTAATTCGAAGACTAAAACTT-TTTCATAAAATGACA
362 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACA
* * * *** *
11099 AACTATTTAGGCCAAATGATCCGATTTCCCGAATGTGGAATGTTCGAAAAATTGCTCAAAAGGAA
426 AACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAA
* * * * * *
11164 TGGATCGTCTTGAATACTTTAAGGAACCTAATTTATATAAGAACTCGTAGAAGTTTAACAAGTAC
490 TGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * * *
11229 GGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAATCCAAAGACC
555 GAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* ** * *
11294 AAAACTTGTTTGCAAAATGACAAACTATTTAGACCGTAGGATGCAATTTCCCGAGCAT-G---GT
620 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
** * * * * *
11355 TC-AGAAAGCTGCACGAAGGATTGGATCATCTTGAATACATTAAGGAACCAAAAAGCTATAAAAG
685 TCGA-AAAATTGCTCGAAGGAATGGATCTTCTTGAATACTTTAAGGAACC--AAAGTTATAAAAG
* * * *
11419 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTTAGGT
747 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACG-
* * * * *
11484 TAATAAGATTTTAATTCAAAAACCAAAACTTTTTTATAAATTGACAAACT
811 TAATAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACT
* * * * * * *
11534 GTTTAGACCAAAAGATGAGATTCCCCAAGCATGGACTGCTCGAAAAATTGCTCGATGGAACATAG
1 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG-TTGAAAAATTGCTC-AAGG-A-ATAG
* *
11599 ATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTA
62 ATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
11664 AGTTCGTCC-ATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAA
127 AGTTCGTCCAAT-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAA
* *
11728 AACTTGATTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGTTC
191 AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC
** * * * * * *
11793 AGAAAATTGCTCGTGGGATTGGATCTTCTAGAATACTTTAAGGAACCAAAGTTAAAAAATAACTT
256 A-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* *
11858 GTAAAAGTATGACAAGTTCGGAAAGTT
320 ATAAAAGTTTGACAAGTTC-GAAAGTT
11885 TGACAAACTA
Statistics
Matches: 4591, Mismatches: 800, Indels: 364
0.80 0.14 0.06
Matches are distributed among these distances:
859 46 0.01
860 9 0.00
861 111 0.02
862 243 0.05
863 687 0.15
864 354 0.08
865 1252 0.27
866 339 0.07
867 326 0.07
868 372 0.08
869 86 0.02
870 7 0.00
871 50 0.01
872 12 0.00
873 14 0.00
874 9 0.00
875 5 0.00
876 1 0.00
878 3 0.00
880 3 0.00
881 2 0.00
883 2 0.00
885 1 0.00
886 4 0.00
887 4 0.00
889 6 0.00
890 5 0.00
891 11 0.00
892 13 0.00
893 20 0.00
894 20 0.00
895 9 0.00
896 20 0.00
897 39 0.01
898 12 0.00
899 98 0.02
900 307 0.07
901 66 0.01
902 11 0.00
904 3 0.00
905 6 0.00
906 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (860 bp):
ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTGAAAAATTGCTCAAGGAATAGATCG
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTT
CGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTT
GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAA
TTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAA
GTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT
GAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTCT
TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAT
CCAAGAACAAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAAAGACCAAAACTTATTT
ACAAAATGACAAACT
Found at i:10692 original size:141 final size:141
Alignment explanation
Indices: 10413--10685 Score: 379
Period size: 142 Copynumber: 1.9 Consensus size: 141
10403 TTACAAAATG
* *
10413 ACAAACTATTTAAACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGTGGA
1 ACAAACTATTTAAACCAAATGATGCAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAGGA
* * * * * * *
10478 ATGGATCTTCTGAAATACTTTAAGGAACCAAAGTTAAAAAATAATTCGTCAAAGTTTGACATGTT
66 ATGGATCGTCTGAAATACTTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTTTAACAAGTT
10543 CGAAAAGTTTA
131 CGAAAAGTTTA
* * *
10554 ACAATCTATTTAGATCAAATGATGCAATTTCTCGAGCATGGAATGTTC-GAAAAATTGCTCGAAG
1 ACAAACTATTTAAACCAAATGATGCAATTTCTCGAGCATGGAATGTTCAG-AAAATTGCTCG-AG
* *
10618 GAATGGATCGTCTTG-AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTAACAA
64 GAATGGATCGTC-TGAAATACTTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTTTAACAA
10682 GTTC
128 GTTC
10686 AGAAGTTCGT
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
140 1 0.01
141 55 0.48
142 57 0.50
143 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (141 bp):
ACAAACTATTTAAACCAAATGATGCAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAGGA
ATGGATCGTCTGAAATACTTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTTTAACAAGTT
CGAAAAGTTTA
Found at i:11243 original size:217 final size:214
Alignment explanation
Indices: 10861--11880 Score: 1104
Period size: 218 Copynumber: 4.7 Consensus size: 214
10851 GACAAGTTCG
* * * *
10861 TAAAACTTATTTACAAAATGACTAACTATTTAGACCAAATGATGCGATTTCCC-AAGCATGAAAA
1 TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAAG--TGGAAT
* * *
10925 GTTCAGAAATTGCTCGAAGGAATGGATCGTCATGAATACTTTAAGGAATCGAAGTTATAAAAGAA
64 GTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * *
10990 CTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCGCATGTAA
129 CTCGTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAA
*
11055 ATAAGTTTTTAATTCGAAGAC
194 ATAAGTTTTTAATTCAAAGAC
* * *
11076 TAAAACTT-TTTCATAAAATGACAAACTATTTAGGCCAAATGATCCGATTTCCCGAATGTGGAAT
1 TAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAA-GTGGAAT
* * * *
11140 GTTCGAAAAATTGCTCAAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAATTTATATAAG
64 GTTC-AAAAATTGCTC-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * *
11205 AACTCGTAGAAGTTTAACAAGTACGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGG
127 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGT
*
11270 AAATAAGTTTTTAATCCAAAGAC
192 AAATAAGTTTTTAATTCAAAGAC
* * ** * * *
11293 CAAAACTTGTTTGCAAAATGACAAACTATTTAGACCGTAGGATGCAATTTCCCG-A---GCATGG
1 TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAAGTGGAAT-G
** * * * * * *
11354 TTCAGAAAGCTGCACGAAGGATTGGATCATCTTGAATACATTAAGGAACCAAAAAGCTATAAAAG
65 TTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAG
* * *
11419 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA-TCCATGAACCAAGAGAGAAACAATTCTTAGG
127 AACTCGTAAAAGTTTGACAAGTTCGGAAGTT-AGTCCAAGAACCAAGAGAGAAACAATTCTCAGG
* * *
11483 TTAATAAGATTTTAATTCAAAAAC
191 TAAATAAGTTTTTAATTCAAAGAC
* * * * * * * * *
11507 CAAAACTTTTTTATAAATTGACAAACTGTTTAGACCAAAAGATGAGA-TTCCCCAAGCATGGACT
1 TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAAG--TGGAAT
* * * * *
11571 GCTCGAAAAATTGCTCGATGGAACATAGATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAA
64 GTTC-AAAAATTGCTCGAAGG-A-ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
11636 GAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACG
126 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGG
11701 TAAATAAGTTTTTAATTCAAAGAC
191 TAAATAAGTTTTTAATTCAAAGAC
* * *
11725 TAAAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCG-AGCATGGAAT
1 TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAAG--TGGAAT
** * * * * * *
11789 GTTCAGAAAATTGCTCGTGGGATTGGATCTTCTAGAATACTTTAAGGAACCAAAGTTAAAAAATA
64 GTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* *
11854 ACTTGTAAAAGTATGACAAGTTCGGAA
128 ACTCGTAAAAGTTTGACAAGTTCGGAA
11881 AGTTTGACAA
Statistics
Matches: 664, Mismatches: 118, Indels: 45
0.80 0.14 0.05
Matches are distributed among these distances:
212 35 0.05
213 16 0.02
214 124 0.19
215 54 0.08
216 71 0.11
217 162 0.24
218 171 0.26
219 8 0.01
220 23 0.03
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (214 bp):
TAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAAGTGGAATGT
TCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
CGTAAAAGTTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAAAT
AAGTTTTTAATTCAAAGAC
Found at i:12004 original size:142 final size:142
Alignment explanation
Indices: 11743--12021 Score: 380
Period size: 142 Copynumber: 2.0 Consensus size: 142
11733 GATTACAAAA
* * **
11743 TGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGTG
1 TGACAAACTATTTAGACCAAATGATACGATATCTCGAGCATGGAATATTCAGAAAATTGCTCGAA
* * * * * *
11808 GGATTGGATCTTCTAGAATACTTTAAGGAACCAAAGTTAAAAAATAACTTGTAAAAGTATGACAA
66 GAAATGGATCGTCTAGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTATGACAA
11873 GTTCGGAAAGTT
131 GTTCGGAAAGTT
* *
11885 TGACAAACTATTTAGACCAAATGATGCGATATCTCGAGCATGGAATATTC-GAAAAATTGCTTGA
1 TGACAAACTATTTAGACCAAATGATACGATATCTCGAGCATGGAATATTCAG-AAAATTGCTCGA
* * * * * *
11949 AGAAATGGATCGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACT
65 AGAAATGGATCGTCTAGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTATGACA
12014 AGTTCGGA
130 AGTTCGGA
12022 TGTTAGTCTA
Statistics
Matches: 118, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
141 1 0.01
142 117 0.99
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (142 bp):
TGACAAACTATTTAGACCAAATGATACGATATCTCGAGCATGGAATATTCAGAAAATTGCTCGAA
GAAATGGATCGTCTAGAATAATTTAAGGAACCAAAGTTAAAAAAGAACTAGTAAAAGTATGACAA
GTTCGGAAAGTT
Found at i:12242 original size:358 final size:360
Alignment explanation
Indices: 11524--12242 Score: 930
Period size: 358 Copynumber: 2.0 Consensus size: 360
11514 TTTTTATAAA
* * *
11524 TTGACAAACTGTTTAGACCAAAAGATGAGATTCCCCAAGCATGGACTGCTCGAAAAATTGCTCGA
1 TTGACAAACTATTTAGACCAAAAGATGAGATTCCCCAAGCATGGAATACTCGAAAAATTGCTCGA
* * *
11589 TGGAACATAGATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGA
66 TAGAACATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTAAAAGTTTGA
* * * * *
11654 CAAGTTCGTAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
131 CAAGTTCGGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
* * * * *
11719 AAAGACTAAAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCTCGAGCAT
196 AAAGACCAAAACTTGATTACAAAATGACAAACTATTTAAACCAAATGATACGATTCCCCAAGCAT
* * * *
11784 GGAATGTTCAGAAAATTGCTCGTGGGATTGGATCTTCTAGAATACTTTAAGGAACCAAAGTTAAA
261 GGAATGCTCAGAAAATTGCTCGTGGGATTAGATCGTCTAGAATACTTTAAGCAACCAAAGTTAAA
*
11849 AAATAACTTGTAAAAGTATGACAAGTTCGGAAAGT
326 AAAGAACTTGTAAAAGTATGACAAGTTCGGAAAGT
* * * * * *
11884 TTGACAAACTATTTAGACCAAATGATGCGATAT-CTCGAGCATGGAATATTCGAAAAATTGCTTG
1 TTGACAAACTATTTAGACCAAAAGATGAGAT-TCCCCAAGCATGGAATACTCGAAAAATTGCTCG
* * * *
11948 A-AGAA-ATGGATCGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTG
65 ATAGAACATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTAAAAGTTTG
* * *
12011 ACTAGTTCGGATGTTAGTCTAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
130 ACAAGTTCGGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * **
12076 TAAAGACCAAAACTTGTTTACAAATTGACAAACTGTTTAAACCAAATGATGTGATTCCCCAAGCA
195 CAAAGACCAAAACTTGATTACAAAATGACAAACTATTTAAACCAAATGATACGATTCCCCAAGCA
* *
12141 TGGACTGCTC-GAAAATTGCTCGATGGAAGA-TAGATCGTCTTGAATACTTTAAGCAA-CAGAAG
260 TGGAATGCTCAGAAAATTGCTCG-TGG--GATTAGATCGTCTAGAATACTTTAAGCAACCA-AAG
* * * *
12203 TTATAAAAGAACTTGTAAAAGTTTTACAGGTTC-GAAAGT
321 TTAAAAAAGAACTTGTAAAAGTATGACAAGTTCGGAAAGT
12242 T
1 T
12243 CGTCCAAGAA
Statistics
Matches: 308, Mismatches: 46, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
357 12 0.04
358 183 0.59
359 56 0.18
360 56 0.18
361 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (360 bp):
TTGACAAACTATTTAGACCAAAAGATGAGATTCCCCAAGCATGGAATACTCGAAAAATTGCTCGA
TAGAACATAGATCGTCTTGAATAATTTAAGCAACAGAAGTTATAAAAGAACTAGTAAAAGTTTGA
CAAGTTCGGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
AAAGACCAAAACTTGATTACAAAATGACAAACTATTTAAACCAAATGATACGATTCCCCAAGCAT
GGAATGCTCAGAAAATTGCTCGTGGGATTAGATCGTCTAGAATACTTTAAGCAACCAAAGTTAAA
AAAGAACTTGTAAAAGTATGACAAGTTCGGAAAGT
Found at i:12642 original size:793 final size:790
Alignment explanation
Indices: 11094--12676 Score: 1959
Period size: 793 Copynumber: 2.0 Consensus size: 790
11084 TTTCATAAAA
* * ** *
11094 TGACAAACTATTTAGGCCAAATGATCCGATTTCCCGAATGTGGAATGTTCGAAAAATTGCTCAAA
1 TGACAAACTATTTAGACCAAATGATCCGATATCCCGAACATGGAATATTCGAAAAATTGCTCAAA
* * * * * * *
11159 AGGAATGGATCGTCTTGAATACTTTAAGGAACCTAATTTATATAAGAACTCGTAGAAGTTTAACA
66 AGAAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTAACA
* **
11224 AGTACGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAATCCAA
131 AGTACGGATGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACAGAAATAAGTTTTTAATCCAA
* * ** * *
11289 AGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCGTAGGATGCAATTTCCCGAGCATGG
196 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAAGGATGCAATTCCCCAAGCATGG
* * * *
11354 TTCAGAAAGCTGCACGAAGGATTGGATCATCTTGAATACATTAAGGAACCAAAAAGCTATAAAAG
261 TTCAGAAAACTGCACGAAGGAATAGATCATCTTGAATACATTAAGCAACCAAAAAGCTATAAAAG
* * *
11419 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTTAGGT
326 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGT
* * * * *
11484 TAATAAGATTTTAATTCAAAAACCAAAACTTTTTTATAAATTGACAAACTGTTTAGACCAAAAGA
391 AAATAAGATTTTAATTCAAAAACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAAGA
* *
11549 TGAGATTCCCCAAGCATGGACTGCTCGAAAAATTGCTCGATGGAACATAGATCGTCTTGAATACT
456 TGAGATTCCCCAAGCATGGAATGCTCAAAAAATTGCTCGATGGAACATAGATCGTCTTGAATACT
* * *
11614 TTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCATGAAC
521 TTAAGCAACAGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * *
11679 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAAAACTTGATTACAAAAT
586 CAAGAGAGAAACAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGATTACAAAAT
* * ***
11744 GACAAACTATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGTGG
651 GACAAACTATTAAGACCAAATGATACAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCAAAG
* * * * *
11809 GATTGGATCTTCTAGAATACTTTAAGGAACCAAAGTTAAAAAATAACTTGTAAAAGTATGACAAG
716 GAATGGATCTTATAGAATACTTTAAGGAAACAAAGTTAAAAAATAACTCGTAAAAGTATGAAAAG
11874 TTCGGAAAGTT
781 TTC-GAAAGTT
* * * **
11885 TGACAAACTATTTAGACCAAATGATGCGATATCTCGAGCATGGAATATTCGAAAAATTGCT-TGA
1 TGACAAACTATTTAGACCAAATGATCCGATATCCCGAACATGGAATATTCGAAAAATTGCTCAAA
* * *
11949 AGAAATGGATCGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACT
66 AGAAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTAACA
* * * **
12014 AGTTCGGATGTTAGTCTAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAA
131 AGTACGGATGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACAGAAATAAGTTTTTAATCCAA
* * * **
12079 AGACCAAAACTTGTTTACAAATTGACAAACTGTTTAAACCAAATGATGTGATTCCCCAAGCATGG
196 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAAGGATGCAATTCCCCAAGCATGG
* * * * * * *
12144 ACTGCTC-GAAAATTGCTCGATGGAAGATAGATCGTCTTGAATACTTTAAGCAA-C-AGAAGTTA
261 --T--TCAGAAAACTGCACGAAGG-A-ATAGATCATCTTGAATACATTAAGCAACCAAAAAGCTA
* * * * *
12206 TAAAAGAACTTGTAAAAGTTTTACAGGTTCGAAAGTTCGTCCAAGAAATAAGAGAGAAACAATTC
320 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAAACAAGAGAGAAACAATTC
* * *
12271 TTACGTAAATATGTTTTTAAATTCAAAGA-C-AAACTTGTTTACAAAATGA-AGAACTATTTAGA
385 TTACGTAAATAAGATTTT-AATTCAAAAACCAAAACTTGTTTACAAAATGACA-AACTATTTAGA
* * * ** * * * * *
12333 CCAAATGATGCGATTTCCTGAGCATGGAATGTTCAAAAAATTGCTC-TTGGGA-ATGGATCTTCT
448 CCAAAAGATGAGATTCCCCAAGCATGGAATGCTCAAAAAATTGCTCGATGGAACATAGATCGTCT
* * * *
12396 TGAATACTTTATGGAATC-GAAGTTAAAAAATAACTCGTAAAAAGTTTGACAAGTTCGGAAGTTG
513 TGAATACTTTAAGCAA-CAGAAGTTAAAAAAGAACTCGT-AAAAGTTTGACAAGTTCGGAAGTTC
* *
12460 GTCCAAGAACTAAGAGAGGAACAATTCTCACGTAAAAAAAGGTTTATAATTCAAAGACCAAAACT
576 GTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAAAAA-GTTTATAATTCAAAGACCAAAACT
* * * *
12525 T-ATTTACAAAATTATAAACTATTAAGAGCAAATGATGCAATTT-TCCGAGCATGGAATGTTC-G
639 TGA-TTACAAAATGACAAACTATTAAGACCAAATGATACAATTTCT-CGAGCATGGAATGTTCAG
* * *
12587 AGAAATTTCTCAAAGGAATGGATCTTATTGAATACTTTAAGGAAACGAAGTTAAAAAATAACTCG
702 A-AAATTGCTCAAAGGAATGGATCTTATAGAATACTTTAAGGAAACAAAGTTAAAAAATAACTCG
*
12652 TAAAAGTTTGAAAAGTTCGAAAGTT
766 TAAAAGTATGAAAAGTTCGAAAGTT
12677 CATCCAAGAA
Statistics
Matches: 669, Mismatches: 108, Indels: 29
0.83 0.13 0.04
Matches are distributed among these distances:
790 208 0.31
791 112 0.17
792 81 0.12
793 233 0.35
794 13 0.02
795 22 0.03
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (790 bp):
TGACAAACTATTTAGACCAAATGATCCGATATCCCGAACATGGAATATTCGAAAAATTGCTCAAA
AGAAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTAACA
AGTACGGATGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACAGAAATAAGTTTTTAATCCAA
AGACCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAAGGATGCAATTCCCCAAGCATGG
TTCAGAAAACTGCACGAAGGAATAGATCATCTTGAATACATTAAGCAACCAAAAAGCTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGT
AAATAAGATTTTAATTCAAAAACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAAGA
TGAGATTCCCCAAGCATGGAATGCTCAAAAAATTGCTCGATGGAACATAGATCGTCTTGAATACT
TTAAGCAACAGAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
CAAGAGAGAAACAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTGATTACAAAAT
GACAAACTATTAAGACCAAATGATACAATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCAAAG
GAATGGATCTTATAGAATACTTTAAGGAAACAAAGTTAAAAAATAACTCGTAAAAGTATGAAAAG
TTCGAAAGTT
Found at i:12723 original size:434 final size:432
Alignment explanation
Indices: 11885--16161 Score: 4521
Period size: 434 Copynumber: 9.9 Consensus size: 432
11875 TCGGAAAGTT
* * *
11885 TGACAAACTATTTAGACCAAATGATGCGATATCTCGAGCATGGAATATTCGAAAAATTG--CTTG
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTTG
* *
11948 AAGAAATGGATCGTCTTGAATAATTTAAGG-ATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGA
66 --GGAATGGATCGTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAACTAGTAAAAGTTTGA
* * * * * * *
12012 CTAGTTCGGATGTTAGTCTAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTT
128 CAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * * * * *
12077 AAAGACCAAAACTTGTTTACAAATTGACAAACTGTTTAAACCAAATGATGTGATTCCCCAAGCAT
193 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCAT
* *
12142 GGACTGCTCG-AAAATTGCTCGATGGAAGATAGATCGTCTTGAATACTTTAA-GCAACAGAAGTT
258 GGACTGCTCGAAAAATTGCTCGATGG-A-ATAGATCATCTTGAATACTTTAAGGAAAC-GAAGTT
* * *
12205 ATAAAAGAACTTGTAAAAGTTTTACAGGTTCGAAAGTTCGTCCAAGAA-ATAAGAGAGAAACAAT
320 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACAAT
* *
12269 TCTTACGTAAATATGTTTTTAAATTCAAAGA-C-AAACTTGTTTACAAAA
384 TCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAA
* *
12317 TGA-AGAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCTT
1 TGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTT
* * * * *
12381 GGGAATGGATCTTCTTGAATACTTTATGGAATCGAAGTTAAAAAATAACTCGTAAAAAGTTTGAC
65 GGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGT-AAAAGTTTGAC
* * * *
12446 AAGTTCGGAAGTTGGTCCAAGAACTAAGAGAGGAACAATTCTCACGTAAAAAAAGGTTTATAATT
129 AAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AAAAAA-GTTTTTAATT
* * * * * * *
12511 CAAAGACCAAAACTTATTTACAAAATTATAAACTATTAAGAGCAAATGATGCAATTTTCCGAGCA
192 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCA
* * * * * * * * * *
12576 TGGAATGTTCGAGAAATTTCTCAAAGGAATGGATCTTATTGAATACTTTAAGGAAACGAAGTTAA
257 TGGACTGCTCGAAAAATTGCTCGATGGAATAGATCATCTTGAATACTTTAAGGAAACGAAGTTAT
* * *
12641 AAAATAACTCGTAAAAGTTTGAAAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCT
322 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
* ** *
12706 CACTTAAATAAGTTTTTAATTCAAAGAAAAAAACTTGTTTGCAAAA
387 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * ** *
12752 TGACAAACTATTTTGACCAAATGATGGGATTTCCCGAGTGTGGAATGTTTGAAAAATTG--CTTG
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTTG
* * * * * *
12815 AAGGATTGGCTCGTCATGAATATTTTAAGGATTCGAGGTTATAAAAGAACTAGTAAAAGTTTGAC
66 --GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTTTGAC
* *
12880 AAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
129 AAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCA
** *
12945 AAGACCAAAACTTGTTTAC---A-GACAAACTATTTAGACCAAACAATGCGATTCCCCGAGCATG
194 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCATG
*
13006 GACTGCTCG-AAAATTGCTCGATGGAATATAGATCATCTTGAATACTTTAA-GCAACAGAAGTTA
259 GACTGCTCGAAAAATTGCTCGATGG-A-ATAGATCATCTTGAATACTTTAAGGAAAC-GAAGTTA
* * *
13069 TAAAAGTACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTC
321 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
13134 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
386 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * * * * * * * **
13181 TGACAAACTGTTTAGACCAAATGACGCGATTTCCAGAACTTGAAATGTTCAAAAAATTACTCAAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-TT
* * * * * * * *
13246 AGGAATGAATCGTCTTGAATACTTTAAGGAACCAAATTTATATAAGAACTCA-TAGAAGTTTAAC
65 GGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACT-AGTAAAAGTTTGAC
* * * * * * *
13310 AAGTGCGAAAGTTCATCCAAGAACCAAGAGCGAAACAATTCTCACGTAAAGAAGTTTATAATTCA
129 AAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCA
* * * * * *
13375 AAGACCAAAACTTATTTACAAAATGACAAACTATTTAGAACAAACGATGCGATTTTCTGGGCATG
194 AAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCATG
* * * * * * *
13440 GAATG-TCTGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTTACA
259 GACTGCTC-GAAAAATTGCTCGATGGAATAGATCATCTTGAATACTTTAAGGAAACGAAGTTATA
* * *
13504 AAATAAATCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAG----AAGAGAGAAACAATTCTC
323 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
*
13565 ACGTAAATAAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAA
388 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
** * * ***
13610 TGACATTCTATTTAGA-CAAATGATGCGATTTCCCGAGCGTGGAATATTCGAAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTTG
* * *
13674 AGAATGGATCGTCTTGAATACTTTAAGG-ATCCAAAGTTATAAAAAAACTAGTAAAAGTTTGACA
66 GGAATGGATCGTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * * * * * *
13738 AGTTCGAAAGTTTGTCCAGGAACAAAGAGGGAAACAATTCTAACGTAAATATGTTTTTAATTCAA
130 AGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAA
* * * *
13803 AAACCAAAACTTGTTTATAAATTGACAAACTTTTTAGACCAAATGATGCGATT-TCTCGAGCATG
195 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTC-CGAGCATG
* * *
13867 GACTGCTCAAAAAATTGCTCGATGGAATACAGATCATCTTGAATACTTTAA-GCAACATAAGTTA
259 GACTGCTCGAAAAATTGCTCGATGGAAT--AGATCATCTTGAATACTTTAAGGAAAC-GAAGTTA
* * *
13931 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAATAA-ACAAGAAAGAAACAATT
321 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACAATT
* * *
13995 CTCATGTAAATAAGTTTTTAAATTCAAAGACTAAAACTTTTTTTACAAAA
385 CTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAAC-TTGTTTACAAAA
* *
14045 TGA-AGAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTACTCTT
1 TGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTT
* * * * *
14109 GGGAATGGATCTTCTTGAATACTTTATGGAATCGAAGTTAAAAAATAACTCGTAAAAGTTTGACA
65 GGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * * * * *
14174 AGTTTGGAAATTGGTCCAAGAACTAAGAGAGGAACAATTCTCACGTAAAAAAAAGTTTATAATTC
130 AGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT--AAAAAAGTTTTTAATTC
* *
14239 AAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGAACAAATGATGCGATT-TCTCGAGCA
193 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTC-CGAGCA
* * * * * * * *
14303 TGGAATGTTCGAGAAATTGCTCGAAGGAAT-GAATCTTGTTGAATACTTTAAGGAACCAAAGTTA
257 TGGACTGCTCGAAAAATTGCTCGATGGAATAG-ATCATCTTGAATACTTTAAGGAAACGAAGTTA
* * * *
14367 AAAAATAACTCGTAAAACTTTGACAAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
321 TAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
* * *
14432 TCACGTAAATAAGTTTTTAATTCCAAGACAAAAACTTGTTTGCAAAA
386 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * ***
14479 TGACAAACTATTTTGACCAAATGATGGGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTTG
14544 GGAATGGATCGTCTTGAATACTTTAAGG-ATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
66 GGAATGGATCGTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * *
14608 AGTTCGGAAGTTCGTCCAGGAACAAAGAGAGAAACAATTCTCACGTAAATATGTTTTTAATTCAA
130 AGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAA
* * * * * *
14673 AAACCAAAACTTGTTTATAAATTGACAAACTGTTTAGACCAAATGATGTGATTCCCCGAGCATGG
195 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCATGG
** * * *
14738 ACTGCTAAAAAAATTGTTCGATGGAATATAGATCGTCTTGAATACTTTAAGCAATA-GAAGTTAT
260 ACTGCTCGAAAAATTGCTCGATGG-A-ATAGATCATCTTGAATACTTTAAGGAA-ACGAAGTTAT
* * * * ** *
14802 AAAAGAATTCATAAAAGTTTGACAAGTTCAAAAGTTCGTCTATTAACCAAGAGAGAAACAATTCT
322 AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
*
14867 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAA
387 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
** * * * * *
14913 TGACAATTTGTTAAGACCAAATGATGCGATTTCTCGAACGTGGAATGTTC-ATAAAATTGCTCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTC--
* * * * * * * * * * * *
14977 AT-GAAATGAATCGTCTTGAGTACTTTAAGGAA-CCAAATTTTATAACAACTCGTACAAGTTTAA
63 TTGGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTTTGA
* * * ** * * *
15040 CAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCGGGGAAATAAGTTTTTAATCC
128 CAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTC
* * * *
15105 AAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTATACCATAA-AATGCGATATC-CTGAGC
193 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGCGAT-TCTCCGAGC
* * ** * * * * * ** *
15168 ATGG--T--TCGAAAAGTTGCGCGAAAGATTGGATCGTCTTGAATGCATTAAGGAACCAAAAAGC
256 ATGGACTGCTCGAAAAATTGCTCGATGGAATAGATCATCTTGAATACTTTAAGGAA--ACGAAGT
* * * *
15229 TATAAAAGAACTCGTAAAAGTTTGACGAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAAT
319 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * * * *
15294 TCTAAGGTTAATAAGATTTTAATTGAAAGACCAAAACTTGTTTACAAAT
384 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * * * * *
15343 TGACAAACTGTTTAAACCAAATGATGCGA-TTCGCCGAGCATGGACTGCTCGAAAAATAGCTCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTC-CCGAGCATGGAATGTTCGAAAAATTGCTC-T
* ** * * * * *
15407 CGCAACATAGAACATCTTGAATACTTT-AGGAACCAGAAGTTATAAAAGAACTAGTAAAACTTTG
64 TGGGA-ATGGATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGAACTAGTAAAAGTTTG
* * *
15471 ACAAGTTCGGAAGTTCATCCAAGAACAAATAGAGAATCAATTCTCACGTAAATAAA-TTTTTAAT
127 ACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA-AAAGTTTTTAAT
* * * * *
15535 TCAAAGACCAAAACTTGTTTATAAATTGACAAACTGTTTAGACCAAATGATGTGATTCCCCGAGC
191 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGC
* * *
15600 ATGGACTACTCAAAAAATTGCTCGATGGAATATAGATCATCTTGAATACTTTAA-GCAACAGAAG
256 ATGGACTGCTCGAAAAATTGCTCGATGG-A-ATAGATCATCTTGAATACTTTAAGGAAAC-GAAG
* * *
15664 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCATGAACCAAGAGAGAAACAA
318 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* * **
15729 TTCTCAGGGAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTATGAAA
383 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * * * * * *
15779 TGACAAATTGTTTAGACCAAATGATTCGATTTCCCAAACGA-GGAATGTTCAAAAAATT--ACTT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-ATGGAATGTTCGAAAAATTGCTCTT
* * * * * * *
15841 GAAAGGAATGAATCATCTTGAATACTTTAAGGAACCAAATTTATATAAA-AACTCGTACAAGTTT
65 G---GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATA-AAAGAACTAGTAAAAGTTT
* * ** * * * * *
15905 AACAAGTGCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAAT
126 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAAT
* * * * * * * * *
15970 CCATAGACTAAAAACTTGTTTGCAAAATGATAAACTATTTATACCATAGGATGCGATT-TCCTAA
191 TCAAAGAC-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCC-GA
* * * * * * * **
16034 GCATGG--T--TC-AGAAAGTTGCGCGAAGGATTGGATCGTCTTGAATTA-ATTAAGGAACCAAA
254 GCATGGACTGCTCGA-AAAATTGCTCGATGGAATAGATCATCTTGAA-TACTTTAAGGAA--ACG
* ** *
16093 AAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTGTCG-AAGTTTTTCCAAGAACCAAGAGAGAA
315 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCGAAAGTTCGTCCAAGAACAAAGAGAGAA
16157 ACAAT
379 ACAAT
16162 GATACGAAAC
Statistics
Matches: 3208, Mismatches: 540, Indels: 194
0.81 0.14 0.05
Matches are distributed among these distances:
426 4 0.00
427 194 0.06
428 108 0.03
429 320 0.10
430 308 0.10
431 31 0.01
432 412 0.13
433 184 0.06
434 695 0.22
435 363 0.11
436 461 0.14
437 13 0.00
438 115 0.04
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (432 bp):
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTTG
GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
GTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAA
GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTCTCCGAGCATGGA
CTGCTCGAAAAATTGCTCGATGGAATAGATCATCTTGAATACTTTAAGGAAACGAAGTTATAAAA
GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
Found at i:13964 original size:218 final size:217
Alignment explanation
Indices: 11885--16161 Score: 4624
Period size: 218 Copynumber: 19.8 Consensus size: 217
11875 TCGGAAAGTT
* * * *
11885 TGACAAACTATTTAGACCAAATGATGCGATATCTCGAGCATGGAATATTCGAAAAATTGCTTGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * *
11950 -GAAATGGATCGTCTTGAATAATTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACT
66 GGAATTAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * * * *
12014 AGTTCGGATGTTAGTCTAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAA
131 AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
12079 AGACCAAAACTTGTTTACAAAT
196 AGACCAAAACTTGTTTACAAAA
* * * * * * * *
12101 TGACAAACTGTTTAAACCAAATGATGTGATTCCCCAAGCATGGACTGCTCG-AAAATTGCTCGAT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
12165 GGAAGATAGATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTTGTAAAAGTTTTAC
66 GGAA-TTAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * *
12230 AGGTTCGAAAGTTCGTCCAAGAA-ATAAGAGAGAAACAATTCTTACGTAAATATGTTTTTAAATT
130 AAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATT
12294 CAAAGA-C-AAACTTGTTTACAAAA
193 CAAAGACCAAAACTTGTTTACAAAA
* * **
12317 TGA-AGAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCTT
1 TGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * *
12381 GGGAA-TGGATCTTCTTGAATACTTTATGGAATC-GAAGTTAAAAAATAACTCGTAAAAAGTTTG
65 AGGAATTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGT-AAAAGTTTG
* * * * * *
12444 ACAAGTTCGGAAGTTGGTCCAAGAACTAAGAGAGGAACAATTCTCACGTAAAAAAAGGTTTATAA
128 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AAATAA-GTTTTTAA
*
12509 TTCAAAGACCAAAACTTATTTACAAAA
191 TTCAAAGACCAAAACTTGTTTACAAAA
* * * * * * * * *
12536 TTATAAACTATTAAGAGCAAATGATGCAATTTTCCGAGCATGGAATGTTCGAGAAATTTCTCAAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * *
12601 GGAA-TGGATCTTATTGAATACTTTAAGGAA-ACGAAGTTAAAAAATAACTCGTAAAAGTTTGAA
66 GGAATTAGATCGTCTTGAATACTTTAAGGAACA-GAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
12664 AAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
** *
12729 AAGAAAAAAACTTGTTTGCAAAA
195 AAGACCAAAACTTGTTTACAAAA
* * ** * *
12752 TGACAAACTATTTTGACCAAATGATGGGATTTCCCGAGTGTGGAATGTTTGAAAAATTGCTTGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * * *
12817 GG-ATTGGCTCGTCATGAATATTTTAAGGATTC-GAGGTTATAAAAGAACTAGTAAAAGTTTGAC
66 GGAATTAGATCGTCTTGAATACTTTAAGGA-ACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
12880 AAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
12945 AAGACCAAAACTTGTTTAC---A
195 AAGACCAAAACTTGTTTACAAAA
** * * * *
12965 -GACAAACTATTTAGACCAAACAATGCGATTCCCCGAGCATGGACTGCTCG-AAAATTGCTCGAT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * *
13028 GGAATATAGATCATCTTGAATACTTTAAGCAACAGAAGTTATAAAAGTACTCGTAAAAGTTTGAC
66 GGAAT-TAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
13093 AAGTTCGAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
13158 AAGACCAAAACTTGTTTACAAAA
195 AAGACCAAAACTTGTTTACAAAA
* * * * * * * * *
13181 TGACAAACTGTTTAGACCAAATGACGCGATTTCCAGAACTTGAAATGTTCAAAAAATTACTCAAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-GA
* * * * * *
13246 AGGAATGA-ATCGTCTTGAATACTTTAAGGAACCA-AATTTATATAAGAACTCATAGAAGTTTAA
65 AGGAATTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * *
13309 CAAGTGCGAAAGTTCATCCAAGAACCAAGAGCGAAACAATTCTCACGTAAAGAAGTTTATAATTC
129 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
*
13374 AAAGACCAAAACTTATTTACAAAA
194 AAAGACCAAAACTTGTTTACAAAA
* * * * *
13398 TGACAAACTATTTAGAACAAACGATGCGATTTTCTGGGCATGGAATG-TCTGAAAAATTGCTCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGA
* * * * * * *
13462 AGGAA-TGGATCTTGTTGAATACTTTAAGGAACCGAAGTTACAAAATAAATCGTAAAAGTTTGAC
65 AGGAATTAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
13526 AAGTTCAAAAGTTCGTCCAAG----AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
13587 AAGACCAAAACTTGTTTACAAAA
195 AAGACCAAAACTTGTTTACAAAA
** * *
13610 TGACATTCTATTTAGA-CAAATGATGCGATTTCCCGAGCGTGGAATATTCGAAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * *
13674 AGAA-TGGATCGTCTTGAATACTTTAAGGATCCA-AAGTTATAAAAAAACTAGTAAAAGTTTGAC
66 GGAATTAGATCGTCTTGAATACTTTAAGGA-ACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * *
13737 AAGTTCGAAAGTTTGTCCAGGAACAAAGAGGGAAACAATTCTAACGTAAATATGTTTTTAATTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * *
13802 AAAACCAAAACTTGTTTATAAAT
195 AAGACCAAAACTTGTTTACAAAA
* * * * * *
13825 TGACAAACTTTTTAGACCAAATGATGCGATTTCTCGAGCATGGACTGCTCAAAAAATTGCTCGAT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
13890 GGAATACAGATCATCTTGAATACTTTAAGCAACATAAGTTATAAAAGAACTCGTAAAAGTTTGAC
66 GGAAT-TAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
13955 AAGTTCGAAAGTTCATCCAATAA-ACAAGAAAGAAACAATTCTCATGTAAATAAGTTTTTAAATT
130 AAGTTCGAAAGTTCGTCCAAGAACA-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AATT
* *
14019 CAAAGACTAAAACTTTTTTTACAAAA
193 CAAAGACCAAAAC-TTGTTTACAAAA
* * **
14045 TGA-AGAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTACTCTT
1 TGACA-AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * *
14109 GGGAA-TGGATCTTCTTGAATACTTTATGGAATC-GAAGTTAAAAAATAACTCGTAAAAGTTTGA
65 AGGAATTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * *
14172 CAAGTTTGGAAA-TTGGTCCAAGAACTAAGAGAGGAACAATTCTCACGTAAAAAAAAGTTTATAA
129 CAAG-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT--AAATAAGTTTTTAA
*
14236 TTCAAAGACCAAAACTTATTTACAAAA
191 TTCAAAGACCAAAACTTGTTTACAAAA
* * *
14263 TGACAAACTATTTAGAACAAATGATGCGATTTCTCGAGCATGGAATGTTCGAGAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * * * *
14328 GGAATGA-ATCTTGTTGAATACTTTAAGGAACCA-AAGTTAAAAAATAACTCGTAAAACTTTGAC
66 GGAATTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* *
14391 AAGTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCC
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* *
14456 AAGACAAAAACTTGTTTGCAAAA
195 AAGACCAAAACTTGTTTACAAAA
* *
14479 TGACAAACTATTTTGACCAAATGATGGGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
14544 GGAA-TGGATCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
66 GGAATTAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
14608 AGTTCGGAAGTTCGTCCAGGAACAAAGAGAGAAACAATTCTCACGTAAATATGTTTTTAATTCAA
131 AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * *
14673 AAACCAAAACTTGTTTATAAAT
196 AGACCAAAACTTGTTTACAAAA
* * * * * ** * *
14695 TGACAAACTGTTTAGACCAAATGATGTGATTCCCCGAGCATGGACTGCTAAAAAAATTGTTCGAT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
14760 GGAATATAGATCGTCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAATTCATAAAAGTTTGAC
66 GGAAT-TAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * ** * *
14825 AAGTTCAAAAGTTCGTCTATTAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
14890 AAGACCAAAACTTGTTTACAAAA
195 AAGACCAAAACTTGTTTACAAAA
** * * * * *
14913 TGACAATTTGTTAAGACCAAATGATGCGATTTCTCGAACGTGGAATGTTC-ATAAAATTGCTCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * * * * * *
14977 ATGAAAT-GAATCGTCTTGAGTACTTTAAGGAACCA-AA-TTTTATAACAACTCGTACAAGTTTA
65 AGGAATTAG-ATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * ** * *
15039 ACAAGTGCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCGGGGAAATAAGTTTTTAATC
128 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
*
15104 CAAAGACCAAAACTTGTTTGCAAAA
193 CAAAGACCAAAACTTGTTTACAAAA
* * * * * *
15129 TGACAAACTATTTATACCATAA-AATGCGATATCCTGAGCAT-G---GTTCGAAAAGTTGCGCGA
1 TGACAAACTATTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * *
15189 AAG-ATTGGATCGTCTTGAATGCATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTTG
65 AGGAATTAGATCGTCTTGAATACTTTAAGGAA-C-AGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * * * * *
15253 ACGAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTAAGGTTAATAAGATTTTAATT
128 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* *
15318 GAAAGACCAAAACTTGTTTACAAAT
193 CAAAGACCAAAACTTGTTTACAAAA
* * * * *
15343 TGACAAACTGTTTAAACCAAATGATGCGA-TTCGCCGAGCATGGACTGCTCGAAAAATAGCTCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTC-CCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * * * *
15407 CGCAACATAGAACATCTTGAATACTTT-AGGAACCAGAAGTTATAAAAGAACTAGTAAAACTTTG
65 AGGAA-TTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTG
* * * * *
15471 ACAAGTTCGGAAGTTCATCCAAGAACAAATAGAGAATCAATTCTCACGTAAATAAATTTTTAATT
128 ACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* *
15536 CAAAGACCAAAACTTGTTTATAAAT
193 CAAAGACCAAAACTTGTTTACAAAA
* * * * ** * *
15561 TGACAAACTGTTTAGACCAAATGATGTGATTCCCCGAGCATGGACTACTCAAAAAATTGCTCGAT
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
* *
15626 GGAATATAGATCATCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
66 GGAAT-TAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * * *
15691 AAGTTCAAAAGTTCGTCCATGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAATTCA
130 AAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
**
15756 AAGACCAAAACTTGTTTATGAAA
195 AAGACCAAAACTTGTTTACAAAA
* * * * * * * *
15779 TGACAAATTGTTTAGACCAAATGATTCGATTTCCCAAACGA-GGAATGTTCAAAAAATTACTTGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-ATGGAATGTTCGAAAAATTGCTCG-
* * * *
15843 AAGGAATGA-ATCATCTTGAATACTTTAAGGAACCA-AATTTATATAAA-AACTCGTACAAGTTT
64 AAGGAATTAGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATA-AAAGAACTCGTAAAAGTTT
* * * * * * *
15905 AACAAGTGCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAGGGAAATAAGTTTTTAAT
127 GACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * *
15970 CCATAGACTAAAAACTTGTTTGCAAAA
192 TCAAAGAC-CAAAACTTGTTTACAAAA
* * * * ** * *
15997 TGATAAACTATTTATACCATAGGATGCGATTTCCTAAGCAT-G---GTTC-AGAAAGTTGCGCGA
1 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGA
* * * *
16057 AGG-ATTGGATCGTCTTGAATTA-ATTAAGGAACCAAAAAGCTATAAAAGAACTCGTAAAAGTTT
65 AGGAATTAGATCGTCTTGAA-TACTTTAAGGAA-C-AGAAGTTATAAAAGAACTCGTAAAAGTTT
** *
16120 GACAAGTGTCG-AAGTTTTTCCAAGAACCAAGAGAGAAACAAT
127 GACAAGT-TCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
16162 GATACGAAAC
Statistics
Matches: 3408, Mismatches: 561, Indels: 185
0.82 0.14 0.04
Matches are distributed among these distances:
211 146 0.04
212 138 0.04
213 160 0.05
214 143 0.04
215 180 0.05
216 879 0.26
217 494 0.14
218 995 0.29
219 181 0.05
220 92 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (217 bp):
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAA
GGAATTAGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
AGACCAAAACTTGTTTACAAAA
Found at i:18232 original size:215 final size:215
Alignment explanation
Indices: 17365--19741 Score: 2629
Period size: 216 Copynumber: 11.1 Consensus size: 215
17355 GACTCATATC
* * * * *
17365 AAACAATTATCAGGGAAACAAGTTTTTAA-TCTAAAGACCAAAACTGGTTTACAAAATGACAAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAATTC-AAAGACCAAAACTTGTTTACAAAATGACAAAC
* ** * * *
17429 TGTTTAGACCAAATGATAAGA-TTCTCCAAGCATGGACTGCTCGAAAATTGCTC-AATGGAACAT
65 TATTTAGACCAAATGATGCGATTTC-CCGAGCATGGAATGTTCGAAAATTGCTCGAA-GG-A-AT
* ** * * *
17492 -AGATCGTCTTGAATACTTTAAGCAATAGAAGTTAT-AAAGTACTAGTAAAAGTTTAACAAGTTC
126 GA-ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
*
17555 GAAAGTTCATCCAAGAA-ACAAGAGAG
190 GAAAGTTCGTCCAAGAACA-AAGAGAG
* * * **
17581 AAACAATTCTCACGTAAATAAGTATTTCAATTCAGAGACTAAAACTTGTTTACAAAATGATGAAC
1 AAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * *
17646 TATTCAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTC-ATGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGAA
* * * * *
17710 TCTTCTTGAAAACTTTATGGAACCGAAGTTAAAAAAATAACTCGTAAAAGTTTGACAAGTTC-AG
129 TCGTCTTGAATACTTTAAGGAACCGAAGTT-ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-
* * *
17774 AAGTTTGCCCAAGAACTAAGAGAG
192 AAGTTCGTCCAAGAACAAAGAGAG
* * * *
17798 AAATAATTCTCACGTAAAAAAGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * *
17863 ATTTAAAACAAATGATGCAATTTCCCGAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGAAT
* * * * * * *
17928 CTTGTTGAATACATTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGATCGAAAA
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
*
17993 TTCGTCCTAGAACAAAGAGAG
195 TTCGTCCAAGAACAAAGAGAG
* * *
18014 AAACAATTCTTACGTAAATAAGTTTTTAACTCAAAGGCCAAAACTTGTTTACAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* *
18079 ATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAATTGATCGAAGGAATGAATC
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGAATC
* * * *
18144 GTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAGT
131 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGT
*
18209 TCATCCAAGAACAAAGAGAG
196 TCGTCCAAGAACAAAGAGAG
*
18229 AAACAATTCTCACGTAAATAAGTTTTTAACTT-AAAGACCAAAACTTGTTTACAAATTGACAAAC
1 AAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * *
18293 TGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGGATGTA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATG-A
* * *
18358 GATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGA
128 -ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
18423 AAGTTCGTCCAAGAA-ATAAGAGAG
192 AAGTTCGTCCAAGAACA-AAGAGAG
* * *
18447 AAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTAAAACATGTTTACAAAATGACGAAC
1 AAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * ** *
18512 TATTTAGACCAAACGATGCAATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGTGGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAATGAA
* * * * *
18577 TCTTCTTGAATACTTTAGGGAACCGAAGTTA-AAAATAACTCGTAAAATTTTGACAAGTTCGGAA
129 TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* *
18641 GTTGGTCCAAGAACTAAGAGAG
194 GTTCGTCCAAGAACAAAGAGAG
* * * * *
18663 AAACAATTCTCATGTAAAAAAGTTTATAATTTAAAGACCAAAACTTATTTACAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * * * *
18728 ATTTAGACCTAATGATGCGATTTCTCAAGCATCGAATGTTTGGAAAATTGATCAAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAATTGCTCGAAGGAATGAAT
* *
18793 -GTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
** *
18857 TTTATCCAAGAACAAAGCGAG
195 TTCGTCCAAGAACAAAGAGAG
* *
18878 AAACAATTCTCACGTAAATAAGTTTTTAATTCAATGACCAAAACTTGTTTACGAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * * *
18943 ATTAAGATCAAATGATGCAATTTCCAGATCATGGAATGTTCGAAAAATTGCTCGATGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG-AAAATTGCTCGAAGGAATGAAT
** * * * *
19008 CACCTTGAATACTTTAAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAG
130 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
*
19073 TTCGTCCAAGAACAAAGAGAC
195 TTCGTCCAAGAACAAAGAGAG
* * * * * * *
19094 AAATAATTTTCACGTAAATAAGTTTTTAATTCAAAAACTAAAACTTGTTTATAAATTGAGAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
** * * * * *
19159 GGTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGTTCAAAAAATTGCTCGATGGAATATAG
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGCTCGAAGGAAT-GA-
* * *** *
19224 ATCGTATTGAATACTTTAAGCAATAAAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
** *
19289 AGTTCGTCCATTAACCAAGAGAG
193 AGTTCGTCCAAGAACAAAGAGAG
* * *
19312 AAACAATTCTCATGTAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACT
1 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
19377 GTTTAGACCAAATGATGCGATTTCCCGAACGTGGAATGTT-GAAAAAATTGCTCGAATGGAATGA
66 ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG--AAAATTGCTCGAA-GGAATGA
* * * * * * *
19441 ATCATCTTGAATACTTTAAGGAACC-AAATT-TATAACAACTCGTACAAGTTTAACAAGTGCGAA
128 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
* *
19504 AGTTCATCCAAGAAC-CA-AGAG
193 AGTTCGTCCAAGAACAAAGAGAG
* * *
19525 AAACAATTCTCGA-GGAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTGCAAAATGACAAAC
1 AAACAATTCTC-ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * * * * *
19589 TATTT-------A--ATGCGATTTCCTAAGCATGG--T-TTGGAAAGTTG-TGCAAAGGATTGGA
65 TATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCT-CGAAGGAATGAA
* * * * * * *
19641 TCATATTGAATACATTAAGGAACCAAAAAGCTATAAAGGAACTCGTAAAAGTTTGACAAGTTTGA
129 TCGTCTTGAATACTTTAAGGAACC--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* * * *
19706 AAGTTCATCCATGAACCAAGGGAG
192 AAGTTCGTCCAAGAACAAAGAGAG
19730 AAACAATTCTCA
1 AAACAATTCTCA
Statistics
Matches: 1836, Mismatches: 285, Indels: 92
0.83 0.13 0.04
Matches are distributed among these distances:
199 29 0.02
200 9 0.00
201 2 0.00
202 5 0.00
203 40 0.02
204 18 0.01
205 14 0.01
206 1 0.00
213 67 0.04
214 31 0.02
215 495 0.27
216 519 0.28
217 214 0.12
218 304 0.17
219 87 0.05
220 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGCTCGAAGGAATGAATC
GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGT
TCGTCCAAGAACAAAGAGAG
Found at i:18613 original size:649 final size:645
Alignment explanation
Indices: 17365--19594 Score: 2753
Period size: 649 Copynumber: 3.4 Consensus size: 645
17355 GACTCATATC
* * * * *
17365 AAACAATTATCAGGGAAACAAGTTTTTAA-TCTAAAGACCAAAACTGGTTTACAAAATGACAAAC
1 AAACAATTCTCATGTAAATAAGTTTTTAATTC-AAAGACCAAAACTTGTTTACAAAATGACAAAC
* ** * * *
17429 TGTTTAGACCAAATGATAAGA-TTCTCCAAGCATGGACTGCTCGAAAATTGCTC-AATGGAACAT
65 TATTTAGACCAAATGATGCGATTTC-CCAAGCATGGAATGTTCGAAAATTGATCGAATGG-A-AT
* * *
17492 -AGATCGTCTTGAATACTTTAAGCAATAGAAGTTAT-AAAGTACTAGTAAAAGTTTAACAAGTTC
127 GA-ATCGTCTTGAATACTTTAAG-GATCGAAGTTATAAAAGAACTAGTAAAAGTTTAACAAGTTC
* *
17555 GAAAGTTCATCCAAGAA-ACAAGAGAGAAACAATTCTCACGTAAATAAGTATTTCAATTCAGAGA
190 GAAAGTTCATCCAAGAACA-AAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAATTCAAAGA
* ** * * *
17619 CTAAAACTTGTTTACAAAATGATGAACTATTCAGACCAAATGATGTGATTTCTCGAGCATGGAAT
253 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * *
17684 GTTC-AGAAAATTGCTC-ATGGAATGGATCTTCTTGAAAACTTTATGGAACCGAAGTTAAAAAAA
318 GTTCGA-AAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGCAACAGAAGTT-ATAAAA
* * * * *
17747 TAACTCGTAAAAGTTTGACAAG-TTCAGAAGTTTGCCCAAGAACTAAGAGAGAAATAATTCTCAC
381 GAACTCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCCAAGAAATAAGAGAGAAATAATTCTCAC
* * * * * * *
17811 GTAAAAAAGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAAAACAAAT
445 GTAAATAAGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACGAACTATTTAGACCAAAT
* ** *
17876 GATGCAATTTCCCGAGTATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCTTGTTGAATAC
510 GATGCAATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGTGGGAATGGATCTTATTGAATAC
* * *
17940 ATTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGATCGAAAATTCGTCCTAGAA
574 TTTAAGGAACCGAAGTT-AAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC-AGAA
18005 CAAAGAGAG
637 CAAAGAGAG
* * * *
18014 AAACAATTCTTACGTAAATAAGTTTTTAACTCAAAGGCCAAAACTTGTTTACAAAATGACAAACT
1 AAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
18079 ATTTAGACCAAATGATGCGATTTCCCGAA-CATGGAATGTTCGAAAATTGATCGAA-GGAATGAA
66 ATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCGAAAATTGATCGAATGGAATGAA
* * *
18142 TCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAA
130 TCGTCTTGAATACTTTAAGGAT-CGAAGTTATAAAAGAACTAGTAAAAGTTTAACAAGTTCGAAA
18207 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTT-AAAGACCAAA
194 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGACCAAA
* * * * *
18271 ACTTGTTTACAAATTGACAAACTGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCG
258 ACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCG
* *
18336 AAAAATTGCTCGATGGGATGTAGATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACT
323 AAAAATTGCTCGATGGAATG--GATCATCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACT
*
18401 CGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAATAAGAGAGAAACAATTCTCACGTAAAT
386 CGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAATAAGAGAGAAATAATTCTCACGTAAAT
* *
18466 AAGTTTTTAAATTCAAAGACTAAAACATGTTTACAAAATGACGAACTATTTAGACCAAACGATGC
451 AAGTTTTT-AATTCAAAGACTAAAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGC
* *
18531 AATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAGG
515 AATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGTGGGAATGGATCTTATTGAATACTTTAAG
* * * *
18596 GAACCGAAGTTAAAAATAACTCGTAAAATTTTGACAAGTTCGGAAGTTGGTCCAAGAACTAAGAG
580 GAACCGAAGTTAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC-AGAACAAAGAG
18661 AG
644 AG
* * * *
18663 AAACAATTCTCATGTAAAAAAGTTTATAATTTAAAGACCAAAACTTATTTACAAAATGACAAACT
1 AAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * * * *
18728 ATTTAGACCTAATGATGCGATTTCTCAAGCATCGAATGTTTGGAAAATTGATC-AAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG-TTCGAAAATTGATCGAATGGAATGAA
* * *
18792 T-GTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
130 TCGTCTTGAATACTTTAAGG-ATCGAAGTTATAAAAGAACTAGTAAAAGTTTAACAAGTTCGAAA
* * *
18856 GTTTATCCAAGAACAAAGCGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGACCAAAA
194 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * *
18921 CTTGTTTACGAAATGACAAACTATTAAGATCAAATGATGCAATTTCCAGATCATGGAATGTTCGA
259 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA
* * * *
18986 AAAATTGCTCGATGGAATGGATCACCTTGAATACTTTAAGTATCCA-AAGTTATAAAAGAACTAG
324 AAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGCA-ACAGAAGTTATAAAAGAACTCG
* * *
19050 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACA-AAGAGACAAATAATTTTCACGTAAATA
388 TAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAA-ATAAGAGAGAAATAATTCTCACGTAAATA
* * * ** *
19114 AGTTTTTAATTCAAAAACTAAAACTTGTTTATAAATTGA-GAAACTGGTTAGACCAAATGATGCG
452 AGTTTTTAATTCAAAGACTAAAACTTGTTTACAAAATGACG-AACTATTTAGACCAAATGATGCA
* * * * * *
19178 ATTCCCCGAGCATGGACTGTTCAAAAAATTGCTCGATGGAATATAGATCGTATTGAATACTTTAA
516 ATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCG-TGGGA-ATGGATCTTATTGAATACTTTAA
* *** * * * *
19243 GCAATAAAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCATTAACCAAG
579 GGAACCGAAGTTA-AAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA-GAACAAAG
19308 AGAG
642 AGAG
* *
19312 AAACAATTCTCATGTAAATAATTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACT
1 AAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
19377 GTTTAGACCAAATGATGCGATTTCCCGAA-CGTGGAATGTT-GAAAAAATTGCTCGAATGGAATG
66 ATTTAGACCAAATGATGCGATTTCCC-AAGCATGGAATGTTCG--AAAATTGATCGAATGGAATG
* * * * * * * * *
19440 AATCATCTTGAATACTTTAAGGAACCAAATT-TATAACAACTCGTACAAGTTTAACAAGTGCGAA
128 AATCGTCTTGAATACTTTAAGGATCGAAGTTATAAAAGAACTAGTAAAAGTTTAACAAGTTCGAA
* * *
19504 AGTTCATCCAAGAAC-CA-AGAGAAACAATTCTCGA-GGAAATAAGTTTTTAATCCAAAGACCAA
193 AGTTCATCCAAGAACAAAGAGAGAAACAATTCTC-ACGTAAATAAGTTTTTAATTCAAAGACCAA
*
19566 AACTTGTTTGCAAAATGACAAACTATTTA
257 AACTTGTTTACAAAATGACAAACTATTTA
19595 ATGCGATTTC
Statistics
Matches: 1381, Mismatches: 166, Indels: 70
0.85 0.10 0.04
Matches are distributed among these distances:
645 1 0.00
646 81 0.06
647 279 0.20
648 123 0.09
649 682 0.49
650 197 0.14
651 18 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (645 bp):
AAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAATTGATCGAATGGAATGAAT
CGTCTTGAATACTTTAAGGATCGAAGTTATAAAAGAACTAGTAAAAGTTTAACAAGTTCGAAAGT
TCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT
TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAA
AATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAA
AAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAATAAGAGAGAAATAATTCTCACGTAAATAAGTT
TTTAATTCAAAGACTAAAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCAATTTC
CCGAGCATGGAATGTTCAGAAAATTGCTCGTGGGAATGGATCTTATTGAATACTTTAAGGAACCG
AAGTTAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAGAACAAAGAGAG
Found at i:19043 original size:865 final size:857
Alignment explanation
Indices: 17364--19741 Score: 3170
Period size: 865 Copynumber: 2.8 Consensus size: 857
17354 CGACTCATAT
* * * * *
17364 CAAACAATTATCAGGGAAACAAGTTTTTAATCTAAAGACCAAAACTGGTTTACAAAATGACAAAC
1 CAAACAATTATCACGTAAATAAGTTTTTAAT-TAAAGACCAAAACTTGTTTACAAATTGACAAAC
** * * * *
17429 TGTTTAGACCAAATGATAAGATTCTCCAAGCATGGACTGCTCG-AAAATTGCTCAATGGAACATA
65 TGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGAATATA
* * *
17493 GATCGTCTTGAATACTTTAAGCAATAGAAGTTAT-AAAGTACTAGTAAAAGTTTAACAAGTTCGA
130 GATCGTCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
* * * *
17557 AAGTTCATCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTATTTCAATTCAGAGACTA
195 AAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTA
* * * *
17622 AAACTTGTTTACAAAATGATGAACTATTCAGACCAAATGATGTGATTTCTCGAGCATGGAATGTT
260 AAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * *
17687 CAGAAAATTGCTCATGGAATGGATCTTCTTGAAAACTTTATGGAACCGAAGTTAAAAAAATAACT
325 CAGAAAATTGCTCGTGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTT--AAAAATAACT
* * * *
17752 CGTAAAAGTTTGACAAGTTCAGAAGTTTGCCCAAGAACTAAGAGAGAAATAATTCTCACGTAAAA
388 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCA-GTAAAA
* *
17817 AAGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAAAACAAATGATGCA
452 AAGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTT--AACTAATGATGCG
* * * * * * *
17882 ATTTCCCGAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTGTTGAATACATTAAGG
515 ATTT-CCAAGCAT-GAATGTTTGGAAAATTG-TCAAAGGAATGGATCATATTGAATACATTAAGG
* * * * * *
17947 AACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGATCGAAAATTCGTCCTAGAACAAAGAG
577 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAG
* *
18012 AGAAACAATTCTTACGTAAATAAGTTTTTAACTCAAAGGCCAAAACTTGTTTACAAAATGACAAA
642 AGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * *
18077 CTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAATTGATCGAAGGAATGAA
707 CTATTAAGACCAAATGATGCAATTTCCAGAACATGGAATGTTCGAAAATTGATCGAAGGAATGAA
** * * *
18142 TCGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAA
772 TCACCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAA
18207 GTTCATCCAAGAACAAAGAGA
837 GTTCATCCAAGAACAAAGAGA
* *
18228 GAAACAATTCTCACGTAAATAAGTTTTTAACTTAAAGACCAAAACTTGTTTACAAATTGACAAAC
1 CAAACAATTATCACGTAAATAAGTTTTTAA-TTAAAGACCAAAACTTGTTTACAAATTGACAAAC
* *
18293 TGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGGATGTA
65 TGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGAATATA
* *
18358 GATCGTCTTGAATACTTTAAGCAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGA
130 GATCGTCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
*
18423 AAGTTCGTCCAAGAAATAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTA
195 AAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTA
* * *
18488 AAACATGTTTACAAAATGACGAACTATTTAGACCAAACGATGCAATTTCCCGAGCATGGAATGTT
260 AAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
*
18553 CAGAAAATTGCTCGTGGGAATGGATCTTCTTGAATACTTTAGGGAACCGAAGTTAAAAATAACTC
325 CAGAAAATTGCTCGT-GGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAATAACTC
* *
18618 GTAAAATTTTGACAAGTTCGGAAGTTGGTCCAAGAACTAAGAGAGAAACAATTCTCATGTAAAAA
389 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCA-GTAAAAA
*
18683 AGTTTATAATTTAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCTAATGATGCGA
453 AGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTA-A-CTAATGATGCGA
* * *
18748 TTTCTCAAGCATCGAATGTTTGGAAAATTGATCAAAGGAATGGAT-GTCTTGAATACTTTAAGGA
516 TTTC-CAAGCAT-GAATGTTTGGAAAATTG-TCAAAGGAATGGATCATATTGAATACATTAAGGA
* * * *
18812 ATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTTATCCAAGAACAAAGCGA
578 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGA
* * *
18877 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAATGACCAAAACTTGTTTACGAAATGACAAAC
643 GAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * *
18942 TATTAAGATCAAATGATGCAATTTCCAGATCATGGAATGTTCGAAAAATTGCTCGATGGAATGGA
708 TATTAAGACCAAATGATGCAATTTCCAGAACATGGAATGTTCG-AAAATTGATCGAAGGAATGAA
*
19007 TCACCTTGAATACTTTAAGTATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAA
772 TCACCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAA
*
19072 GTTCGTCCAAGAACAAAGAGA
837 GTTCATCCAAGAACAAAGAGA
* * * * * *
19093 CAAATAATTTTCACGTAAATAAGTTTTTAATTCAAAAACTAAAACTTGTTTATAAATTGAGAAAC
1 CAAACAATTATCACGTAAATAAGTTTTTAATT-AAAGACCAAAACTTGTTTACAAATTGACAAAC
* * *
19158 TGGTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGTTCAAAAAATTGCTCGATGGAATATA
65 TGTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGAATATA
* * *
19223 GATCGTATTGAATACTTTAAGCAATAAAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGA
130 GATCGTCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA
** * * * *
19288 AAGTTCGTCCATTAACCAAGAGAGAAACAATTCTCATGTAAATAA-TTTTTTAATTCAAAGACCA
195 AAGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTA
* * * * *
19352 AAACTTGTTTGCAAAATGACAAACTGTTTAGACCAAATGATGCGATTTCCCGAACGTGGAATGTT
260 AAACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT
* * * * * * * *
19417 GAAAAAATTGCTCGAATGGAATGAATCATCTTGAATACTTTAAGGAACC-AAATTTATAACAACT
325 CAGAAAATTGCTCG--TGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAATAACT
* * * * * * * *
19481 CGTACAAGTTTAACAAGTGCGAAAGTTCATCCAAGAAC-CA-AGAGAAACAATTCTCGAGGAAAT
388 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTC-AGTAAAA
* * * *
19544 AAGTTTTTAATCCAAAGACCAAAACTTGTTTGCAAAATGACAAACTA-TT---T-A--ATGCGAT
452 AAGTTTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAACTAATGATGCGAT
* *
19602 TTCCTAAGCATG---GTTTGGAAAGTTGTGCAAAGGATTGGATCATATTGAATACATTAAGGAAC
517 TTCC-AAGCATGAATGTTTGGAAAATTGT-CAAAGGAATGGATCATATTGAATACATTAAGGAAC
* * * * * * *
19664 CAAAAAGCTATAAAGGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCATGAACCAAGGGA
580 C--GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGA
19729 GAAACAATTCTCA
643 GAAACAATTCTCA
Statistics
Matches: 1342, Mismatches: 155, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
848 1 0.00
849 24 0.02
850 18 0.01
852 68 0.05
853 16 0.01
855 1 0.00
856 1 0.00
861 2 0.00
862 61 0.05
863 3 0.00
864 396 0.30
865 556 0.41
866 159 0.12
867 36 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (857 bp):
CAAACAATTATCACGTAAATAAGTTTTTAATTAAAGACCAAAACTTGTTTACAAATTGACAAACT
GTTTAGACCAAATGATGCGATTCCCCGAGCATGGACTGCTCGAAAAATTGCTCGATGGAATATAG
ATCGTCTTGAATACTTTAAGCAATAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAA
AGTTCGTCCAAGAAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTCAAAGACTAA
AACTTGTTTACAAAATGACGAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
AGAAAATTGCTCGTGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTAAAAATAACTCGT
AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCAGTAAAAAAGT
TTATAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAACTAATGATGCGATTTCC
AAGCATGAATGTTTGGAAAATTGTCAAAGGAATGGATCATATTGAATACATTAAGGAACCGAAGT
TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTAACTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTAAGA
CCAAATGATGCAATTTCCAGAACATGGAATGTTCGAAAATTGATCGAAGGAATGAATCACCTTGA
ATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCCA
AGAACAAAGAGA
Done.