Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010243.1 Kokia drynarioides strain JFW-HI SEQ_125075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 671

Length: 1119
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:298 original size:59 final size:58

Alignment explanation


    Indices: 204--322  Score: 229
    Period size: 59  Copynumber: 2.0  Consensus size: 58

        194 CGTCCGACAC

                                                                      
        204 GAATCGGAGGTAAAAAATGTCCATCTGTTCTTCTTTTCCTTTTTTTTAAAACAACATA
          1 GAATCGGAGGTAAAAAATGTCCATCTGTTCTTCTTTTCCTTTTTTTTAAAACAACATA

                                                                       
        262 GANATCGGAGGTAAAAAATGTCCATCTGTTCTTCTTTTCCTTTTTTTTAAAACAACATA
          1 GA-ATCGGAGGTAAAAAATGTCCATCTGTTCTTCTTTTCCTTTTTTTTAAAACAACATA

              
        321 GA
          1 GA

        323 TCTGGACCGA


Statistics
Matches: 60,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  58    2  0.03
  59   58  0.97

ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39


Consensus pattern (58 bp):   
GAATCGGAGGTAAAAAATGTCCATCTGTTCTTCTTTTCCTTTTTTTTAAAACAACATA

Found at i:607 original size:9 final size:9

Alignment explanation


    Indices: 577--618  Score: 57
    Period size: 9  Copynumber: 4.6  Consensus size: 9

        567 TTCCCTTTTT

                    *
        577 TATTATTAT
          1 TATTATTAA

                    * 
        586 TATTCATTGA
          1 TATT-ATTAA

                     
        596 TATTATTAA
          1 TATTATTAA

                     
        605 TATTATTAA
          1 TATTATTAA

                 
        614 TATTA
          1 TATTA

        619 AAAAAATATT


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
   9   22  0.76
  10    7  0.24

ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57


Consensus pattern (9 bp):   
TATTATTAA
Done.