genome.fa.s10246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010246.1 Kokia drynarioides strain JFW-HI SEQ_125078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140684

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183--1279	30	3.3	29	85	4	113	25	7	4	62	1.39
1223--1279	17	3.6	18	71	28	65	24	12	3	59	1.48
1211--1287	30	2.6	30	91	4	120	25	9	2	62	1.38
2108--2245	59	2.4	57	81	7	152	41	18	16	23	1.90
2108--2650	62	9.0	61	77	8	386	37	15	16	30	1.90
2191--2646	124	3.8	120	82	9	516	36	14	17	31	1.90
14774--14822	19	2.6	19	100	0	98	46	20	14	18	1.83
19213--19384	85	2.0	85	96	0	317	48	6	11	33	1.64
25439--25572	55	2.4	55	85	2	180	27	5	16	50	1.68
26106--26157	25	2.1	25	85	0	68	26	3	1	67	1.18
29772--29798	3	9.0	3	100	0	54	66	0	0	33	0.92
32699--32784	28	3.1	28	80	9	88	34	0	10	54	1.35
32733--32784	26	2.0	26	85	7	70	30	0	7	61	1.24
32792--32854	14	4.5	14	73	15	58	23	0	23	52	1.47
32789--32842	28	1.9	28	85	7	74	24	0	22	53	1.46
33281--33320	12	3.3	12	92	0	62	7	45	25	22	1.78
36218--36259	6	7.0	6	94	0	75	19	16	47	16	1.83
37682--37712	5	6.0	5	96	3	53	19	3	0	77	0.90
37886--37955	29	2.3	30	80	4	79	47	10	5	37	1.61
38052--38102	9	5.4	9	80	20	52	29	1	1	66	1.13
38032--38078	20	2.3	21	85	3	60	23	4	4	68	1.26
38063--38105	17	2.5	16	88	11	59	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38071--38112	19	2.2	19	87	8	59	35	0	0	64	0.94
41657--41765	19	5.8	19	86	3	150	29	17	26	26	1.97
41654--41765	37	3.0	37	92	1	170	29	16	26	26	1.97
41657--41762	56	1.9	55	88	1	158	28	17	26	27	1.98
42417--42476	21	2.8	22	82	9	63	30	8	26	35	1.86
42440--42487	21	2.3	21	88	0	69	20	10	25	43	1.83
43100--43158	7	8.3	7	73	16	50	40	1	1	55	1.20
43111--43186	34	2.1	34	86	11	100	42	1	1	55	1.16
43171--43211	20	2.1	19	86	9	55	43	0	0	56	0.99
43483--43524	21	2.0	22	86	13	61	52	4	0	42	1.22
43651--43698	24	2.0	24	84	4	62	43	10	0	45	1.38
43658--43703	24	2.0	23	86	4	65	41	6	0	52	1.27
43819--43852	16	2.1	16	88	0	50	47	5	0	47	1.26
45422--45456	18	1.9	18	94	0	61	54	2	0	42	1.15
45713--45762	20	2.6	19	78	6	55	76	0	2	22	0.89
45713--45760	19	2.5	19	80	12	53	75	0	2	22	0.91
45744--45836	40	2.4	40	84	12	122	67	6	3	22	1.28
48356--48489	43	3.1	43	78	2	144	29	24	17	27	1.98
53734--53925	42	4.6	42	80	7	196	16	22	17	43	1.88
53721--53925	82	2.5	82	82	3	221	17	21	18	42	1.89
54447--54488	21	2.0	21	95	0	75	50	19	0	30	1.48
57833--57887	19	2.9	20	78	7	53	34	0	3	61	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68035--68079	21	2.1	21	84	15	58	33	2	2	62	1.20
68119--68150	3	10.7	3	93	0	55	62	3	0	34	1.11
70474--70505	15	2.0	17	88	11	50	43	0	18	37	1.51
71916--71954	21	1.9	20	84	5	51	38	5	5	51	1.46
73000--73041	9	4.7	9	80	8	50	73	9	4	11	1.22
78253--78302	25	2.0	25	100	0	100	32	24	12	32	1.91
79311--79360	12	4.2	12	78	14	50	2	34	0	64	1.05
99827--99864	17	2.2	18	95	4	69	57	5	10	26	1.53
99841--99901	29	2.1	29	81	6	70	67	3	8	21	1.32
101861--101972	3	37.3	3	79	0	98	41	35	21	1	1.64
101867--101972	24	4.5	24	81	7	119	41	35	20	1	1.64
127295--127340	24	2.0	23	83	12	58	60	4	4	30	1.35
128162--128188	3	9.0	3	100	0	54	66	0	0	33	0.92
134000--134066	29	2.2	29	84	7	80	20	2	4	71	1.17

Tables:   1

The End!