Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010252.1 Kokia drynarioides strain JFW-HI SEQ_125087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12745
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29

Warning! 120 characters in sequence are not A, C, G, or T


Found at i:2802 original size:15 final size:15

Alignment explanation


    Indices: 2782--2812  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2772 CTGTATCAGT

                           
       2782 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
       2797 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
       2812 A
          1 A

       2813 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC

Found at i:3953 original size:13 final size:13

Alignment explanation


    Indices: 3921--3946  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3911 GTATTATACT

                         
       3921 ATATATAGTATAA
          1 ATATATAGTATAA

                         
       3934 ATATATAGTATAA
          1 ATATATAGTATAA

       3947 TACTATACAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38


Consensus pattern (13 bp):   
ATATATAGTATAA

Found at i:8096 original size:15 final size:15

Alignment explanation


    Indices: 8076--8106  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       8066 CTGTATCAGT

                           
       8076 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
       8091 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
       8106 A
          1 A

       8107 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC

Found at i:11736 original size:15 final size:15

Alignment explanation


    Indices: 11716--11746  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

      11706 CTGTATCAGT

                           
      11716 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
      11731 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
      11746 A
          1 A

      11747 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC
Done.