genome.fa.s10253.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010253.1 Kokia drynarioides strain JFW-HI SEQ_125090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  208150

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258--339	12	6.6	13	72	19	59	0	31	0	68	0.90
262--330	17	4.2	18	75	22	62	0	31	0	68	0.90
269--335	4	16.8	4	79	17	68	0	28	0	71	0.86
259--335	32	2.4	32	85	6	95	0	31	0	68	0.90
277--346	11	6.4	11	75	11	63	1	27	0	71	0.94
266--346	11	7.2	11	72	18	60	1	29	0	69	0.97
1134--1366	120	1.9	119	90	2	369	39	18	13	28	1.88
1515--1561	16	2.7	18	77	12	53	65	8	2	23	1.31
3010--3047	18	2.1	19	90	5	60	47	10	5	36	1.61
3698--3726	14	2.1	14	100	0	58	27	6	0	65	1.18
3997--4056	29	2.1	29	100	0	120	36	33	6	23	1.81
4201--4231	15	2.1	15	93	0	53	29	0	9	61	1.28
7634--7675	23	1.9	21	90	9	66	52	7	11	28	1.64
13017--13260	121	2.0	121	98	0	470	35	6	14	43	1.73
30675--30736	31	2.0	32	87	3	90	37	11	8	43	1.70
51974--52127	48	3.2	47	65	13	109	50	12	3	33	1.58
51969--52150	96	1.9	95	90	3	294	48	11	4	35	1.59
58503--58528	3	8.7	3	100	0	52	0	34	0	65	0.93
62726--62759	2	17.0	2	100	0	68	50	50	0	0	1.00
65084--65126	19	2.3	18	80	11	50	44	2	2	51	1.27
67176--67246	31	2.3	31	95	0	124	36	14	19	29	1.91
68676--68700	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72658--72699	16	2.5	17	88	7	59	38	0	0	61	0.96
73344--73387	3	14.3	3	95	4	79	31	2	0	65	1.05
79147--79183	2	18.0	2	94	5	65	48	2	0	48	1.15
87363--87423	31	2.0	31	81	12	72	40	8	9	40	1.68
93803--93847	21	2.1	21	87	0	63	31	0	6	62	1.21
93847--93885	2	19.5	2	100	0	78	48	0	0	51	1.00
93927--93955	14	2.0	15	93	6	51	37	0	0	62	0.96
96904--96930	7	3.9	7	100	0	54	85	0	0	14	0.61
107331--107369	18	2.2	17	86	13	53	76	2	5	15	1.06
108234--108289	24	2.4	24	93	3	96	37	16	7	39	1.76
110634--110681	25	1.9	25	86	0	69	39	8	8	43	1.65
118186--118305	60	2.0	60	98	0	231	40	8	12	39	1.73
118308--118357	27	1.9	25	92	8	82	34	6	0	60	1.21
119664--119889	118	1.9	117	81	4	267	24	12	19	44	1.85
121707--121837	65	2.0	65	100	0	262	34	12	19	33	1.89
129728--130028	150	2.0	150	92	1	496	33	15	5	45	1.69
136055--136107	20	2.7	20	80	11	56	75	11	1	11	1.13
136064--136119	20	2.8	20	83	0	67	71	14	3	10	1.26
153531--153559	15	1.9	15	100	0	58	13	20	13	51	1.75
159305--159349	18	2.5	18	88	0	63	44	28	24	2	1.66
164520--164645	59	2.1	59	83	12	159	26	19	15	38	1.91
168391--168436	22	2.0	22	87	4	65	47	4	8	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168461--169088	84	7.5	84	91	2	973	42	5	4	47	1.48
168461--169088	335	1.9	333	91	2	1037	42	5	4	47	1.48
169181--169241	22	2.8	22	85	5	79	39	27	8	24	1.84
170274--170317	20	2.3	18	81	11	52	20	6	6	65	1.39
172440--173077	116	5.4	114	75	11	447	37	16	18	27	1.92
172423--172855	175	2.5	175	78	8	425	39	15	17	27	1.90
172428--173073	59	11.0	59	73	9	365	37	16	18	27	1.92
184495--184533	20	2.0	19	85	14	53	48	0	0	51	1.00
184492--184536	19	2.4	18	82	17	56	53	0	0	46	1.00
190525--190812	155	1.9	155	90	1	461	37	20	15	26	1.93
196671--196794	54	2.4	53	82	9	148	29	14	20	35	1.93
196817--196996	54	3.3	54	68	16	147	24	20	23	31	1.98
196871--197037	54	3.1	54	69	16	146	25	22	25	26	2.00
196813--197046	108	2.2	108	92	0	387	25	20	23	30	1.98
205938--205989	17	2.8	17	80	11	50	61	3	1	32	1.25
207274--207311	20	1.9	20	88	0	58	47	0	0	52	1.00

Tables:   1

The End!