Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010255.1 Kokia drynarioides strain JFW-HI SEQ_125092, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8639
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.33


Found at i:6938 original size:19 final size:19

Alignment explanation


    Indices: 6914--6960  Score: 85
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       6904 AGTAAATTTC

                        *      
       6914 CATTTTGCAATTTCTGTAG
          1 CATTTTGCAATTGCTGTAG

                               
       6933 CATTTTGCAATTGCTGTAG
          1 CATTTTGCAATTGCTGTAG

                     
       6952 CATTTTGCA
          1 CATTTTGCA

       6961 TTGAATTACT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  19   27  1.00

ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45


Consensus pattern (19 bp):   
CATTTTGCAATTGCTGTAG
Done.