Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010259.1 Kokia drynarioides strain JFW-HI SEQ_125097, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1220
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.33


Found at i:960 original size:37 final size:39

Alignment explanation


    Indices: 859--960  Score: 102
    Period size: 37  Copynumber: 2.6  Consensus size: 39

        849 CGACCTTGAG

                                                     *
        859 TCGATGAGACACTAGGTGTCA-TTATTTTACTTCGGATAGAT
          1 TCGATGAGACACTAGGTGTCACTTA---TACTTCGGATAGAC

                         *   **              *   * 
        900 TCGATGAGACACTGGGTACCACTTA-ACTTCGGCTAGGC
          1 TCGATGAGACACTAGGTGTCACTTATACTTCGGATAGAC

                                    
        938 T-GATGAGACACTAGGTGTCACTT
          1 TCGATGAGACACTAGGTGTCACTT

        961 TATTGCTTCG


Statistics
Matches: 51,  Mismatches: 9, Indels: 6
        0.77            0.14        0.09

Matches are distributed among these distances:
  37   19  0.37
  38   11  0.22
  41   18  0.35
  42    3  0.06

ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30


Consensus pattern (39 bp):   
TCGATGAGACACTAGGTGTCACTTATACTTCGGATAGAC
Done.