Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010263.1 Kokia drynarioides strain JFW-HI SEQ_125101, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 951

Length: 1586
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:118 original size:21 final size:21

Alignment explanation


    Indices: 92--134  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         82 TAGAGTCCAT

                          *       
         92 TTGCCCTGG-AGGAGTAGAGTA
          1 TTGCCC-GGAAGGAATAGAGTA

                                 
        113 TTGCCCGGAAGGAATAGAGTA
          1 TTGCCCGGAAGGAATAGAGTA

             
        134 T
          1 T

        135 CGCGATGACT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20    2  0.10
  21   18  0.90

ACGTcount: A:0.28, C:0.14, G:0.35, T:0.23


Consensus pattern (21 bp):   
TTGCCCGGAAGGAATAGAGTA

Found at i:259 original size:45 final size:45

Alignment explanation


    Indices: 129--265  Score: 202
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        119 GGAAGGAATA

                  *   *  *           *  *           **   
        129 GAGTATCGCGATGACTCGTCAAACTCAGCCTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                   *                     
        174 GAGTATTGCGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                                         
        219 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
        264 GA
          1 GA

        266 TAAGATATGC


Statistics
Matches: 83,  Mismatches: 9, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  45   83  1.00

ACGTcount: A:0.20, C:0.23, G:0.27, T:0.31


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.