Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010265.1 Kokia drynarioides strain JFW-HI SEQ_125104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3611
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34


Found at i:2985 original size:16 final size:14

Alignment explanation


    Indices: 2964--3007  Score: 52
    Period size: 15  Copynumber: 2.9  Consensus size: 14

       2954 ATTTTTATGG

                           
       2964 ATTAAAGAATAATTA
          1 ATTAAA-AATAATTA

                        *  
       2979 TATTAAAAATAAATA
          1 -ATTAAAAATAATTA

                          
       2994 ATATAAAAATAATT
          1 AT-TAAAAATAATT

       3008 CAATATGTAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  14    2  0.08
  15   17  0.68
  16    6  0.24

ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34


Consensus pattern (14 bp):   
ATTAAAAATAATTA
Done.