genome.fa.s10267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010267.1 Kokia drynarioides strain JFW-HI SEQ_125106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  375764

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481--527	22	2.2	21	81	11	51	6	21	0	72	1.07
21489--21563	32	2.5	29	75	12	80	13	2	30	53	1.53
22657--22748	44	2.1	44	91	0	148	35	16	9	38	1.82
31031--31097	18	3.7	18	80	4	64	7	46	0	46	1.31
31043--31095	15	3.5	15	82	7	54	9	43	0	47	1.36
30997--31065	3	23.0	3	85	5	50	1	43	0	55	1.08
42125--42657	100	5.3	100	81	2	606	38	23	11	26	1.88
42163--42645	199	2.4	199	88	0	698	39	23	10	27	1.86
46518--46554	19	2.0	18	89	5	56	64	0	0	35	0.94
47079--47112	17	2.1	16	88	5	50	35	0	5	58	1.22
52314--52404	43	2.1	43	93	0	155	41	10	12	35	1.77
52561--52595	16	2.2	16	90	5	54	68	5	0	25	1.11
53092--53129	19	2.1	19	85	9	53	71	0	0	28	0.87
55747--55788	22	1.9	22	85	9	59	47	19	9	23	1.78
57982--58029	16	3.1	16	78	3	53	54	0	0	45	0.99
63004--63029	8	3.2	8	100	0	52	53	0	0	46	1.00
68451--68492	21	2.1	19	86	8	57	26	0	4	69	1.08
68644--68668	2	12.5	2	100	0	50	48	0	0	52	1.00
69611--69650	19	2.1	19	85	0	53	65	0	0	35	0.93
74373--74417	15	3.1	15	87	3	65	33	17	0	48	1.48
80080--80112	16	2.1	16	88	11	50	30	0	3	66	1.06
86386--86456	29	2.4	29	85	4	88	50	11	15	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87455--87481	14	1.9	14	100	0	54	22	7	11	59	1.56
89336--89365	15	2.0	15	100	0	60	33	13	0	53	1.40
89518--89600	31	2.7	31	78	0	85	44	12	9	33	1.74
95138--95191	25	2.4	22	75	19	56	25	5	11	57	1.55
95966--95990	13	1.9	13	100	0	50	36	8	0	56	1.29
96438--96920	151	3.2	148	81	8	570	25	9	25	39	1.85
100656--100694	15	2.4	17	87	8	55	35	10	0	53	1.35
102135--102164	14	2.1	14	93	0	51	36	0	23	40	1.55
105686--105895	67	3.1	67	91	2	348	31	12	19	36	1.89
109285--109401	30	4.0	30	76	6	105	34	17	6	41	1.76
113666--113716	21	2.4	21	83	0	66	50	11	3	33	1.57
124233--124258	12	2.2	12	100	0	52	61	15	7	15	1.55
129603--129670	31	2.2	31	84	10	86	48	7	2	41	1.46
130839--130870	9	3.4	9	95	4	55	25	0	0	75	0.81
131540--131581	22	1.9	22	95	0	75	23	19	21	35	1.96
141253--141400	78	1.9	78	85	0	206	20	7	22	49	1.74
149372--149418	16	2.9	16	72	12	51	29	10	8	51	1.66
149453--149504	21	2.3	23	75	21	56	32	1	11	53	1.48
154860--154944	31	2.8	31	83	5	102	50	3	11	34	1.56
154860--154992	31	4.3	31	74	17	100	46	6	14	33	1.69
160853--160877	13	1.9	13	100	0	50	36	8	0	56	1.29
165697--166106	224	1.8	219	90	3	660	30	5	19	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165992--166770	232	3.2	232	78	11	685	32	6	18	42	1.76
166115--166770	252	2.7	249	79	8	689	33	7	17	41	1.77
172348--172412	18	3.5	18	76	12	60	52	4	1	41	1.31
176500--176968	164	3.0	154	76	9	403	26	18	14	40	1.89
181054--181114	30	2.1	30	84	3	79	37	3	11	47	1.56
181688--181981	148	2.0	148	99	0	579	23	24	18	33	1.97
185783--185808	5	5.2	5	100	0	52	19	80	0	0	0.71
198193--198252	16	3.5	17	72	20	54	65	5	1	28	1.23
198213--198253	18	2.3	18	87	8	57	70	4	2	21	1.18
202249--202277	5	5.8	5	100	0	58	20	17	20	41	1.90
206387--206439	17	3.2	16	74	10	52	32	32	18	16	1.94
207016--207073	28	2.1	28	100	0	116	29	39	10	20	1.86
207057--207392	185	1.8	185	87	3	498	35	21	10	33	1.87
207061--207467	185	2.2	185	82	4	482	36	21	9	32	1.86
208223--208260	20	1.9	20	89	10	60	36	0	2	60	1.11
213852--213907	28	2.0	28	89	3	85	32	7	30	30	1.84
213786--214179	30	13.5	29	72	15	212	33	4	26	35	1.77
213862--214171	90	3.5	87	78	13	278	34	3	26	35	1.73
214019--214239	88	2.5	87	82	7	223	31	3	27	38	1.74
215467--215506	21	2.0	20	85	5	53	17	2	20	60	1.48
215880--215927	6	7.8	6	80	13	53	52	2	4	41	1.32
215866--215925	17	3.8	16	74	14	52	48	3	6	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215897--215951	17	3.2	17	79	5	74	61	5	0	32	1.19
221608--221634	3	9.0	3	100	0	54	0	33	0	66	0.92
222454--222496	21	2.0	21	81	4	50	37	2	2	58	1.24
228659--228809	74	2.1	72	83	5	187	35	25	7	32	1.83
237250--237291	14	3.1	14	86	3	50	35	38	9	16	1.81
237274--237309	18	1.9	19	88	5	56	50	30	2	16	1.60
244586--244650	24	2.8	24	67	19	57	41	1	3	53	1.25
247948--247988	18	2.4	16	84	15	55	17	0	4	78	0.93
247948--247999	19	2.9	17	82	8	59	19	0	5	75	1.01
251880--252034	62	2.5	60	82	8	170	45	15	0	38	1.51
251912--252060	60	2.4	62	78	5	151	47	12	0	38	1.47
259168--259207	10	3.9	10	83	6	53	40	0	0	60	0.97
259169--259225	21	2.6	23	78	8	66	42	0	0	57	0.98
260831--260861	2	16.0	2	93	6	55	51	0	0	48	1.00
260831--260859	15	1.9	15	100	0	58	51	0	0	48	1.00
261754--261884	48	2.7	47	81	9	131	27	17	19	35	1.94
262128--262171	23	1.9	23	86	9	63	52	2	2	43	1.26
264407--264771	126	2.9	126	86	3	509	44	18	16	20	1.87
266810--266875	30	2.2	29	82	10	80	33	7	10	48	1.66
274243--274365	56	2.2	56	84	8	151	49	17	14	18	1.80
274491--274531	18	2.3	18	86	0	55	48	24	0	26	1.51
280360--280429	29	2.3	29	83	9	79	48	11	12	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284027--284056	1	30.0	1	93	0	51	0	3	0	96	0.21
286026--286058	2	17.0	2	93	6	59	51	0	0	48	1.00
287567--287661	17	5.6	17	70	16	65	68	0	1	30	0.97
287571--287658	33	2.6	33	75	12	81	68	0	1	30	0.97
290181--290234	26	2.1	25	83	10	65	50	1	5	42	1.36
296077--296375	150	2.0	149	95	0	535	45	10	9	35	1.70
297549--297595	22	2.2	21	84	3	58	14	14	4	65	1.41
297532--297612	33	2.5	33	78	8	92	18	16	4	60	1.53
300297--300347	23	2.2	23	82	6	59	62	1	0	35	1.06
304365--304423	29	2.0	29	100	0	118	27	22	3	47	1.67
305204--305245	20	2.1	20	95	0	75	38	0	2	59	1.10
305209--305257	20	2.4	20	86	3	62	46	0	2	51	1.12
306488--306521	2	17.0	2	100	0	68	50	0	0	50	1.00
308144--308168	9	2.8	9	100	0	50	88	12	0	0	0.53
310320--310354	18	1.9	18	88	11	54	60	2	0	37	1.12
310598--310652	26	2.2	26	83	9	69	32	0	1	65	1.03
319576--319619	22	2.0	22	90	0	70	59	9	6	25	1.53
333059--333088	10	3.0	10	95	0	51	30	30	13	26	1.94
340189--340322	23	5.8	22	84	9	94	12	22	25	39	1.89
340226--340326	46	2.2	46	79	13	118	10	21	25	41	1.86
346746--346776	9	3.4	9	95	0	53	12	6	19	61	1.53
347784--347816	16	1.9	18	88	11	52	36	6	12	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351275--351343	26	2.7	25	78	12	79	40	1	5	52	1.34
354642--354674	4	8.2	4	100	0	66	24	0	75	0	0.80
357799--357829	2	15.5	2	100	0	62	48	0	51	0	1.00
357972--358012	3	14.0	3	89	5	57	60	0	34	4	1.18
358864--358892	15	1.9	15	100	0	58	34	37	0	27	1.57
360024--360051	2	14.0	2	100	0	56	50	0	0	50	1.00
361855--361927	15	4.9	15	69	14	53	60	1	2	35	1.20

Tables:   1

The End!