genome.fa.s10270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010270.1 Kokia drynarioides strain JFW-HI SEQ_125114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49224

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121--656	58	9.2	58	80	8	448	33	29	3	33	1.74
121--402	58	4.8	59	93	2	462	32	30	3	32	1.75
121--402	117	2.4	116	94	1	492	32	30	3	32	1.75
406--580	59	3.0	58	81	2	208	33	29	2	34	1.70
1593--1633	21	2.0	21	85	0	55	24	9	39	26	1.86
1782--1829	21	2.3	21	100	0	96	41	14	10	33	1.80
2596--2633	17	2.2	17	86	9	51	50	0	2	47	1.15
2592--2641	14	3.6	14	75	20	50	60	0	2	38	1.09
2941--3201	127	2.1	126	83	5	321	28	20	19	31	1.97
3067--3331	140	1.9	141	84	2	363	27	20	22	30	1.98
3332--3498	38	4.5	37	81	4	176	30	16	14	38	1.89
3332--3568	74	3.2	73	79	4	244	29	18	13	37	1.89
3332--3528	38	5.3	37	80	6	157	29	18	13	37	1.90
3571--3603	12	2.8	12	100	0	66	33	18	21	27	1.96
3476--3715	133	1.8	133	80	3	295	28	21	14	35	1.93
3598--3734	36	3.8	36	81	7	154	27	21	13	37	1.92
4900--4944	20	2.2	21	81	18	60	80	2	15	2	0.92
4919--4953	16	2.2	16	90	5	54	77	5	17	0	0.96
4908--4937	11	2.7	11	94	0	51	83	3	13	0	0.77
8609--8802	23	8.6	23	73	17	129	12	24	20	41	1.88
8609--8719	48	2.4	48	82	10	131	13	26	20	39	1.90
8694--8768	39	1.9	39	91	0	123	12	22	21	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9214--9242	14	2.1	14	100	0	58	27	13	6	51	1.66
10497--10538	21	2.0	22	85	4	59	52	4	0	42	1.22
13416--13468	21	2.5	21	87	0	79	32	7	30	30	1.85
15464--15920	38	12.3	37	73	9	310	28	17	13	41	1.87
15464--15914	75	6.1	74	76	8	357	27	17	13	41	1.87
21932--21976	23	2.0	23	86	0	63	40	0	0	60	0.97
22655--22698	23	1.9	23	100	0	88	29	11	9	50	1.69
33827--33883	23	2.5	23	88	0	87	22	21	26	29	1.99
34618--34688	9	7.4	9	73	10	61	2	16	2	77	1.01
35606--35668	17	3.6	17	78	18	60	66	1	6	25	1.24
47699--47723	13	1.9	13	100	0	50	24	0	20	56	1.43

Tables:   1

The End!