Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010277.1 Kokia drynarioides strain JFW-HI SEQ_125121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4032
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:700 original size:31 final size:31

Alignment explanation


    Indices: 665--734  Score: 140
    Period size: 31  Copynumber: 2.3  Consensus size: 31

        655 AAAGGTGAAT

                                           
        665 AGTACTTGAACAATTTACCCTATTTGTTGGA
          1 AGTACTTGAACAATTTACCCTATTTGTTGGA

                                           
        696 AGTACTTGAACAATTTACCCTATTTGTTGGA
          1 AGTACTTGAACAATTTACCCTATTTGTTGGA

                    
        727 AGTACTTG
          1 AGTACTTG

        735 TAACTTACAA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   39  1.00

ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39


Consensus pattern (31 bp):   
AGTACTTGAACAATTTACCCTATTTGTTGGA
Done.