Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010278.1 Kokia drynarioides strain JFW-HI SEQ_125122, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6949
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32


Found at i:4742 original size:58 final size:59

Alignment explanation


    Indices: 4667--4783  Score: 209
    Period size: 59  Copynumber: 2.0  Consensus size: 59

       4657 GGTTAGGGTT

                *                  *                                   
       4667 GTTATAGTTGCTCTCAACAA-CCTTTTTATTTCGCACTTTATAACAATCTGCTTTGACA
          1 GTTACAGTTGCTCTCAACAACCCCTTTTATTTCGCACTTTATAACAATCTGCTTTGACA

                                                                       
       4725 GTTACAGTTGCTCTCAACAACCCCTTTTATTTCGCACTTTATAACAATCTGCTTTGACA
          1 GTTACAGTTGCTCTCAACAACCCCTTTTATTTCGCACTTTATAACAATCTGCTTTGACA

       4784 TGACCTAACT


Statistics
Matches: 56,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  58   19  0.34
  59   37  0.66

ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39


Consensus pattern (59 bp):   
GTTACAGTTGCTCTCAACAACCCCTTTTATTTCGCACTTTATAACAATCTGCTTTGACA

Found at i:5736 original size:21 final size:21

Alignment explanation


    Indices: 5680--5736  Score: 78
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       5670 GTTGGGAAGG

                          *      
       5680 TTCTACCGATACAAGTATGAC
          1 TTCTACCGATACAATTATGAC

             *                *  
       5701 TACTACCGATACAATTATTAC
          1 TTCTACCGATACAATTATGAC

                      *    
       5722 TTCTACCGATTCAAT
          1 TTCTACCGATACAAT

       5737 AAACTCCAAA


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33


Consensus pattern (21 bp):   
TTCTACCGATACAATTATGAC
Done.