Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010280.1 Kokia drynarioides strain JFW-HI SEQ_125126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3939
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29


Found at i:3393 original size:5 final size:6

Alignment explanation


    Indices: 3363--3392  Score: 51
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       3353 AAAAAATGAG

                                              
       3363 GAAAAA GAAAAAA GAAAAA GAAAAA GAAAA
          1 GAAAAA G-AAAAA GAAAAA GAAAAA GAAAA

       3393 GGGTGAGGTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   6   17  0.74
   7    6  0.26

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (6 bp):   
GAAAAA
Done.