Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010282.1 Kokia drynarioides strain JFW-HI SEQ_125130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8128
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35


Found at i:38 original size:4 final size:4

Alignment explanation


    Indices: 18--83  Score: 71
    Period size: 4  Copynumber: 16.2  Consensus size: 4

          8 AACACATTAC

                       *                     *   *      *               
         18 CTTT CTTT CATT C-TT CTTT CTTT CCTCT CCTT CTTC CTTT CTTT CTTT
          1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT

                                  
         66 CTTT CCTTT CTTT CTTT C
          1 CTTT -CTTT CTTT CTTT C

         84 CTGTTTATTT


Statistics
Matches: 52,  Mismatches: 7, Indels: 6
        0.80            0.11        0.09

Matches are distributed among these distances:
   3    3  0.06
   4   42  0.81
   5    7  0.13

ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65


Consensus pattern (4 bp):   
CTTT

Found at i:71 original size:17 final size:16

Alignment explanation


    Indices: 18--83  Score: 71
    Period size: 17  Copynumber: 4.1  Consensus size: 16

          8 AACACATTAC

                     *      
         18 CTTTCTTTCATTC-TT
          1 CTTTCTTTCTTTCTTT

                       *  *  
         33 CTTTCTTTCCTCTCCTT
          1 CTTTCTTT-CTTTCTTT

               *            
         50 CTTCCTTTCTTTCTTT
          1 CTTTCTTTCTTTCTTT

                             
         66 CTTTCCTTTCTTTCTTT
          1 CTTT-CTTTCTTTCTTT

             
         83 C
          1 C

         84 CTGTTTATTT


Statistics
Matches: 42,  Mismatches: 6, Indels: 4
        0.81            0.12        0.08

Matches are distributed among these distances:
  15    8  0.19
  16   12  0.29
  17   22  0.52

ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65


Consensus pattern (16 bp):   
CTTTCTTTCTTTCTTT
Done.