Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010285.1 Kokia drynarioides strain JFW-HI SEQ_125134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1540
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35


Found at i:388 original size:27 final size:27

Alignment explanation


    Indices: 358--417  Score: 86
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        348 TCAAAAATTT

                  *                     
        358 TATTAAGAAGAGGATC-AAGAGAAACAA
          1 TATTAAAAAGAGGATCAAAG-GAAACAA

                                       
        385 TATTAAAAAGAGGATCAAAGGAAACAA
          1 TATTAAAAAGAGGATCAAAGGAAACAA

                  
        412 TCATTA
          1 T-ATTA

        418 GTTGAAAGTT


Statistics
Matches: 30,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  27   23  0.77
  28    7  0.23

ACGTcount: A:0.55, C:0.08, G:0.18, T:0.18


Consensus pattern (27 bp):   
TATTAAAAAGAGGATCAAAGGAAACAA
Done.