Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010305.1 Kokia drynarioides strain JFW-HI SEQ_125164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34


Found at i:330 original size:139 final size:139

Alignment explanation


    Indices: 80--353  Score: 469
    Period size: 139  Copynumber: 2.0  Consensus size: 139

         70 GGCTCTCGGG

                               *                                             
         80 CACTTCTCCGTATCTCATCGGGAAGATTTGCTCTCTTCGAGCCTCGTTTGGGTTTTCTTATCAGT
          1 CACTTCTCCGTATCTCATCAGGAAGATTTGCTCTCTTCGAGCCTCGTTTGGGTTTTCTTATCAGT

                                     *                                       
        145 GTCTCATCAGGAAGATGATCCCATCGCTGTTTCGACCCATTTCTCTGTATCTCATCAGGAAGACG
         66 GTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCATTTCTCTGTATCTCATCAGGAAGACG

                     
        210 AATCTGGTT
        131 AATCTGGTT

                                                         *              *    
        219 CACTTCTCCGTATCTCATCAGGAAGATTTGCTCGT-TTCGAGCCTTGTTTGGGTTTTCTTCTCAG
          1 CACTTCTCCGTATCTCATCAGGAAGATTTGCTC-TCTTCGAGCCTCGTTTGGGTTTTCTTATCAG

                                                ** *                         
        283 TGTCTCATCAGGAAGATGATCCCATCACTGTTTCGATTCGTTTCTCTGTATCTCATCAGGAAGAC
         65 TGTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCATTTCTCTGTATCTCATCAGGAAGAC

                  
        348 GAATCT
        130 GAATCT

        354 ACTTTGTGGA


Statistics
Matches: 127,  Mismatches: 7, Indels: 2
        0.93            0.05        0.01

Matches are distributed among these distances:
 139  126  0.99
 140    1  0.01

ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36


Consensus pattern (139 bp):   
CACTTCTCCGTATCTCATCAGGAAGATTTGCTCTCTTCGAGCCTCGTTTGGGTTTTCTTATCAGT
GTCTCATCAGGAAGATGATCCCATCACTGTTTCGACCCATTTCTCTGTATCTCATCAGGAAGACG
AATCTGGTT
Done.