genome.fa.s10318.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010318.1 Kokia drynarioides strain JFW-HI SEQ_125180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25100

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651--1050	59	6.8	59	86	3	536	34	28	4	33	1.76
643--1050	118	3.5	118	91	0	629	34	28	3	33	1.76
1316--1506	96	2.0	96	83	8	246	28	20	14	36	1.92
2386--2434	24	2.0	24	88	0	71	40	20	14	24	1.89
2725--2782	24	2.6	23	84	13	68	34	1	0	63	1.04
2821--2897	6	12.8	6	74	0	64	32	10	1	55	1.42
2809--2897	24	3.8	24	79	8	103	33	10	1	55	1.41
2801--2897	18	5.8	18	71	18	84	34	11	1	53	1.44
5738--5874	73	1.9	74	89	1	213	40	10	12	36	1.78
6683--7149	59	7.9	58	76	10	394	38	2	25	32	1.70
6682--7148	29	15.8	30	63	15	122	38	2	25	32	1.70
6683--7110	118	3.6	117	83	5	452	38	2	25	32	1.71
6920--7086	29	5.7	30	72	17	136	42	3	23	30	1.71
8240--8318	10	7.6	10	74	17	56	36	3	3	55	1.36
8240--8309	13	5.4	13	69	17	56	37	4	2	55	1.34
8240--8320	19	4.3	18	69	20	58	35	3	3	56	1.35
9053--9128	6	13.0	6	75	15	70	53	2	1	42	1.23
9035--9066	17	1.9	17	93	6	57	43	0	0	56	0.99
9053--9128	18	4.4	17	83	11	91	53	2	1	42	1.23
13166--13350	96	1.9	96	84	6	250	36	14	18	30	1.91
13569--13657	28	3.1	27	78	9	88	32	12	24	30	1.92
13582--13659	29	2.8	28	84	7	104	32	10	29	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13791--13982	29	6.5	28	79	10	145	36	2	22	38	1.69
13685--13834	58	2.6	58	81	9	180	40	4	20	35	1.73
13791--14016	30	7.6	29	78	10	183	35	3	24	37	1.71
13789--13982	59	3.3	58	83	6	221	36	3	22	38	1.70
21341--21431	28	3.2	28	84	3	119	30	13	26	29	1.94
21593--21744	30	5.1	30	82	5	175	34	3	24	37	1.72
21591--21703	58	1.9	59	89	1	174	30	2	24	41	1.69
21600--21794	30	6.6	30	77	13	136	32	4	24	38	1.74
21720--21794	29	2.6	30	83	14	95	33	5	24	37	1.78

Tables:   1

The End!