Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010326.1 Kokia drynarioides strain JFW-HI SEQ_125190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36


Found at i:3895 original size:7 final size:7

Alignment explanation


    Indices: 3883--3915  Score: 50
    Period size: 7  Copynumber: 4.9  Consensus size: 7

       3873 TCAAAAATTA

                   
       3883 AAATTTT
          1 AAATTTT

             *     
       3890 AGATTTT
          1 AAATTTT

                   
       3897 AAATTTT
          1 AAATTTT

                   
       3904 -AATTTT
          1 AAATTTT

                  
       3910 AAATTT
          1 AAATTT

       3916 ATTGTAAATT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   6    6  0.26
   7   17  0.74

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (7 bp):   
AAATTTT

Found at i:3910 original size:13 final size:14

Alignment explanation


    Indices: 3883--3915  Score: 59
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       3873 TCAAAAATTA

                          
       3883 AAATTTTAGATTTT
          1 AAATTTTAGATTTT

                          
       3897 AAATTTTA-ATTTT
          1 AAATTTTAGATTTT

                  
       3910 AAATTT
          1 AAATTT

       3916 ATTGTAAATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (14 bp):   
AAATTTTAGATTTT
Done.