Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010329.1 Kokia drynarioides strain JFW-HI SEQ_125194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:609 original size:58 final size:58

Alignment explanation


    Indices: 454--851  Score: 529
    Period size: 59  Copynumber: 6.8  Consensus size: 58

        444 GTCCCTGAAC

                           *                                          *
        454 CTTCCAAAAATTACCGTTTTACCCCTGAATTCCCAAAAATCCCATTTTTGACCCCGAAT
          1 CTTCCAAAAATTACCATTTTACCCC-GAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                                      *              *                 
        513 CTTCCAAAAATTACCATTTTACCCCTAAATTCCCAAAAATCTCATTTTTGACCCCGAAG
          1 CTTCCAAAAATTACCATTTTACCCC-GAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                           *                                       *   
        572 CTTCC-AAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCAAAG
          1 CTTCCAAAAATTACCATTTTACCC-CGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                                           *                 *         
        630 CTTCCAAAAATTACCATTTTACCCTCGAATTTCCAAAAATCCCATTTTTAACCCCGAAG
          1 CTTCCAAAAATTACCATTTTACCC-CGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                           *                                            
        689 CTTCC-AAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTTGACCCCGAAG
          1 CTTCCAAAAATTACCATTTTACCC-CGAATTCCCAAAAATCCCA-TTTTTGACCCCGAAG

                             *                *              *        *
        748 CTTCC-AAAATTACCATCTTACCCCGAACTT--CTAAAATCCCATTTTTTACCCCGAAT
          1 CTTCCAAAAATTACCATTTTACCCCGAA-TTCCCAAAAATCCCATTTTTGACCCCGAAG

                                      *            * *       
        804 CTTCCAAAAATTACCATTTTATCCCCAAACTT-CCAAAATTACCATTTT
          1 CTTCCAAAAATTACCATTTTA-CCCCGAA-TTCCCAAAAATCCCATTTT

        852 ACCCTCGAGT


Statistics
Matches: 307,  Mismatches: 25, Indels: 14
        0.89            0.07        0.04

Matches are distributed among these distances:
  56   18  0.06
  57   24  0.08
  58  101  0.33
  59  164  0.53

ACGTcount: A:0.32, C:0.32, G:0.05, T:0.31


Consensus pattern (58 bp):   
CTTCCAAAAATTACCATTTTACCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

Found at i:666 original size:117 final size:117

Alignment explanation


    Indices: 454--824  Score: 563
    Period size: 117  Copynumber: 3.2  Consensus size: 117

        444 GTCCCTGAAC

                                                                       *     
        454 CTTCCAAAAATTACCGTTTTACCC-CTGAATTCCCAAAAATCCCATTTTTGACCCCGAATCTTCC
          1 CTTCCAAAAATTACCGTTTTACCCTC-GAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCC

                                 *    *         *       *         
        518 AAAAATTACCATTTTACCCCTAAATTCCCAAAAATCTCATTTTTGACCCCGAAG
         65 AAAAATTACCATTTTACCCC-GAATTTCCAAAAATCCCATTTTTAACCCCGAAG

                                                                   *         
        572 CTTCC-AAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCAAAGCTTCCA
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCA

                                                                 
        636 AAAATTACCATTTTACCCTCGAATTTCCAAAAATCCCATTTTTAACCCCGAAG
         66 AAAATTACCATTTTACCC-CGAATTTCCAAAAATCCCATTTTTAACCCCGAAG

                                                                             
        689 CTTCC-AAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTTGACCCCGAAGCTTCC
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCA-TTTTTGACCCCGAAGCTTCC

                        *          *    *              *        *
        753 -AAAATTACCATCTTACCCCGAACTT-CTAAAATCCCATTTTTTACCCCGAAT
         65 AAAAATTACCATTTTACCCCGAATTTCCAAAAATCCCATTTTTAACCCCGAAG

                           *     
        804 CTTCCAAAAATTACCATTTTA
          1 CTTCCAAAAATTACCGTTTTA

        825 TCCCCAAACT


Statistics
Matches: 236,  Mismatches: 13, Indels: 10
        0.91            0.05        0.04

Matches are distributed among these distances:
 115   28  0.12
 116   20  0.08
 117  162  0.69
 118   26  0.11

ACGTcount: A:0.32, C:0.32, G:0.06, T:0.31


Consensus pattern (117 bp):   
CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCA
AAAATTACCATTTTACCCCGAATTTCCAAAAATCCCATTTTTAACCCCGAAG

Done.