Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010333.1 Kokia drynarioides strain JFW-HI SEQ_125199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1418
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:1393 original size:45 final size:45

Alignment explanation


    Indices: 1274--1399  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       1264 AGCATCGCGA

                          *  *           **              
       1274 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG

                  *     *  *                             
       1319 TGGCTCATCAAATTGCGGCTGATATCCTTGGCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG

                    *                           
       1364 TGGCTCGTTAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       1400 TGAGCTATGC


Statistics
Matches: 70,  Mismatches: 11, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   70  1.00

ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG
Done.