Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010335.1 Kokia drynarioides strain JFW-HI SEQ_125201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30


Found at i:267 original size:31 final size:31

Alignment explanation


    Indices: 229--288  Score: 111
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        219 AATGACATTT

                                           
        229 AAATCAATTTGATTAGAATCAAATCAAATCA
          1 AAATCAATTTGATTAGAATCAAATCAAATCA

                          *              
        260 AAATCAATTTGATTGGAATCAAATCAAAT
          1 AAATCAATTTGATTAGAATCAAATCAAAT

        289 TGAGATACTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.50, C:0.12, G:0.08, T:0.30


Consensus pattern (31 bp):   
AAATCAATTTGATTAGAATCAAATCAAATCA
Done.