Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010336.1 Kokia drynarioides strain JFW-HI SEQ_125202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8288
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2476 original size:13 final size:13

Alignment explanation


    Indices: 2458--2482  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2448 AATATTTTAA

                         
       2458 AAATAAAAAATTT
          1 AAATAAAAAATTT

                        
       2471 AAATAAAAAATT
          1 AAATAAAAAATT

       2483 ATTATTAAAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28


Consensus pattern (13 bp):   
AAATAAAAAATTT

Found at i:3774 original size:14 final size:15

Alignment explanation


    Indices: 3750--3780  Score: 55
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       3740 GAGTTGTTTG

                           
       3750 AAAGCATAAAAATAA
          1 AAAGCATAAAAATAA

                           
       3765 AAAG-ATAAAAATAA
          1 AAAGCATAAAAATAA

              
       3779 AA
          1 AA

       3781 TAAAATTGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   12  0.75
  15    4  0.25

ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13


Consensus pattern (15 bp):   
AAAGCATAAAAATAA
Done.