Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010345.1 Kokia drynarioides strain JFW-HI SEQ_125212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2204
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:955 original size:45 final size:45

Alignment explanation


    Indices: 891--1027  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        881 GCATAGCTCA

                                                   *     
        891 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGTAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *       *             
        936 TCAAGCCAAGGATATCAGCCTCAATTTGACGGGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *              *   *    
        981 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
       1026 TC
          1 TC

       1028 TATTCCTCTC


Statistics
Matches: 81,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   81  1.00

ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:1055 original size:21 final size:20

Alignment explanation


    Indices: 1022--1060  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1012 AGCCATCGCG

                    *            
       1022 ATACTCTATTCCTCTCGGGCA
          1 ATACTCTACTCCTC-CGGGCA

                   *          
       1043 ATACTCTGCTCCTCCGGG
          1 ATACTCTACTCCTCCGGG

       1061 GCAAATGGAC


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    4  0.25
  21   12  0.75

ACGTcount: A:0.15, C:0.36, G:0.18, T:0.31


Consensus pattern (20 bp):   
ATACTCTACTCCTCCGGGCA
Done.