Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010346.1 Kokia drynarioides strain JFW-HI SEQ_125213, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1692
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38


Found at i:813 original size:3 final size:3

Alignment explanation


    Indices: 802--923  Score: 84
    Period size: 3  Copynumber: 38.7  Consensus size: 3

        792 ATTGACTAAA

                                    *    *                   *        *     
        802 TAT TAAT TAT TAAT TAT TAG TAGG TAT TAT TAAT TAT TGT TAT TAA TACT
          1 TAT T-AT TAT T-AT TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT TA-T

                 *      *       *   * *      *                          
        852 TAT TGT TAT CAT TAT CAT AAA T-T TGT TATT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT

                                               
        897 TAT TAT TAT TAT TAT TAT TATT TAT TA
          1 TAT TAT TAT TAT TAT TAT TA-T TAT TA

        924 ATGAAATTAT


Statistics
Matches: 95,  Mismatches: 16, Indels: 16
        0.75            0.13        0.13

Matches are distributed among these distances:
   2    1  0.01
   3   74  0.78
   4   20  0.21

ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59


Consensus pattern (3 bp):   
TAT

Found at i:1625 original size:14 final size:15

Alignment explanation


    Indices: 1599--1628  Score: 53
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       1589 ATTTGGGCCA

                           
       1599 TTGTAATTTGGACTT
          1 TTGTAATTTGGACTT

                           
       1614 TTGTAA-TTGGACTT
          1 TTGTAATTTGGACTT

             
       1628 T
          1 T

       1629 AATTTAATTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    9  0.60
  15    6  0.40

ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53


Consensus pattern (15 bp):   
TTGTAATTTGGACTT
Done.