Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001035.1 Kokia drynarioides strain JFW-HI SEQ_112262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13299
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:467 original size:30 final size:30

Alignment explanation


    Indices: 403--628  Score: 210
    Period size: 29  Copynumber: 7.6  Consensus size: 30

        393 CCCTAGACTG

                      *           * **    
        403 TCCAAAAATTACATTTTTA-CCATCGAACT
          1 TCCAAAAATTCCATTTTTACCCCTAAAACT

            *                      *       
        432 CCCAAAAATTCCATTTTTGA-CCATAAAACT
          1 TCCAAAAATTCCATTTTT-ACCCCTAAAACT

                       *                  
        462 TCCAAAAATTCAATTTTTACCCCT-AAACT
          1 TCCAAAAATTCCATTTTTACCCCTAAAACT

                             *   *  *     
        491 TCCAAAAATTCCATTTTGACCTC-GAAACT
          1 TCCAAAAATTCCATTTTTACCCCTAAAACT

             *                     **     
        520 TTC-AAAATTCCATTTTTACCCCCGAAACT
          1 TCCAAAAATTCCATTTTTACCCCTAAAACT

                                    *      
        549 TCCAAAAATTCCATTTTTAACCCCGAAAACT
          1 TCCAAAAATTCCATTTTT-ACCCCTAAAACT

             *     *                *       
        580 TGCAAAATTTCCATTTTGTACCCCCAAAACTT
          1 TCCAAAAATTCCATTTT-TACCCCTAAAAC-T

              *      *       
        612 TCAAAAAATACCATTTT
          1 TCCAAAAATTCCATTTT

        629 GCCCTCGGAT


Statistics
Matches: 166,  Mismatches: 23, Indels: 13
        0.82            0.11        0.06

Matches are distributed among these distances:
  28   17  0.10
  29   57  0.34
  30   42  0.25
  31   35  0.21
  32   15  0.09

ACGTcount: A:0.37, C:0.27, G:0.04, T:0.33


Consensus pattern (30 bp):   
TCCAAAAATTCCATTTTTACCCCTAAAACT

Found at i:12497 original size:1 final size:1

Alignment explanation


    Indices: 12493--12523  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

      12483 NNNNNNNNNN

                                           
      12493 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

      12524 AATTTCAAAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.