genome.fa.s10352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010352.1 Kokia drynarioides strain JFW-HI SEQ_125220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22081

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--162	3	20.0	3	90	3	88	62	0	3	33	1.11
424--470	3	15.0	3	86	4	58	61	0	4	34	1.15
1525--1844	30	10.9	28	71	14	200	34	34	3	27	1.74
1512--1996	59	8.0	59	84	8	544	34	34	3	28	1.76
1512--1833	29	10.9	29	76	12	291	33	34	3	28	1.75
1850--1994	30	4.9	29	80	9	168	33	33	4	28	1.76
1715--1969	131	1.9	131	90	1	404	33	35	3	27	1.75
1656--2024	190	1.9	190	88	2	562	33	34	3	28	1.75
3329--3532	22	9.3	22	82	2	185	18	20	21	39	1.92
3319--3486	66	2.5	66	88	1	230	16	19	22	41	1.90
3337--3530	66	2.9	66	86	3	230	18	19	22	40	1.92
3567--3653	40	2.2	40	83	8	106	22	19	24	33	1.97
5993--6115	59	2.1	58	79	10	133	36	8	21	33	1.84
6034--6391	59	6.1	59	73	10	261	34	4	27	33	1.78
6034--6157	30	4.1	31	78	10	123	34	4	28	32	1.78
6230--6390	29	5.5	30	78	10	154	34	3	24	37	1.72
6034--6390	29	12.2	28	70	15	127	34	4	27	33	1.78
8300--8377	6	13.3	6	73	15	65	52	2	2	42	1.28
8300--8409	35	3.1	35	80	8	125	52	4	1	40	1.32
8282--8409	17	7.4	16	73	19	98	51	4	1	42	1.32
8744--9304	206	2.7	206	84	3	691	19	22	21	36	1.95
9820--9879	27	2.2	27	84	3	75	55	6	16	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21119--21197	30	2.7	29	84	7	97	34	5	26	34	1.78
21119--21543	29	14.5	29	73	10	276	33	3	27	35	1.75
21080--21543	59	7.9	60	75	6	355	33	3	27	35	1.75
21146--21543	117	3.4	118	73	13	327	33	3	28	35	1.74

Tables:   1

The End!