Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010353.1 Kokia drynarioides strain JFW-HI SEQ_125222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2122
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Found at i:1020 original size:428 final size:425
Alignment explanation
Indices: 1--2120 Score: 1740
Period size: 428 Copynumber: 5.0 Consensus size: 425
* * * * *
1 AAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTTTGGGCCGAACTT-TCGAAGTTGACAAA
1 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCAAACTTCT-GAACTTGACAAA
* * *
65 CTTTTACG-GTTTCTTTTATATCTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGC
65 CTTTTACGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
129 AATTTT-TCGAACTTTCCATGCTTGGAAATCGCATCACTTGGTTTAAATAGTTGTCATTTTGTAA
129 AATTTTCTCGAACATTCCATGCTTGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAA
* * *
193 ACAACTTTTGGCCTTTGAATTAAAAAATTCTTTAGGTGAGAATTATTTCTTTCTTGGTTCTCGGC
194 ACAACTTTTGGTCTTTGAATTAAAAAATTATTTAGTTGAGAATTATTTCTTTCTTGGTTCTCGGC
* * *
258 CAAACTTTAAACTTGACAAAA-TTTT-CAAGTTCTTTTATAAATTTTGTTCATTAAATTA-TCAA
259 CGAACTTTAAACTTGA-AAAACTTTTACGAGTTCTTTTAT-AATTTTGTTCATTAAAGTATTCAA
* * * ** * *
320 GACAATCCATTCCTTC-AACAATATATTGTACAGTCTGTGCTTGGTAAATCACATTA-TTAGGCC
322 GACGATCCATTCCTTCGAGCAAT-T-TTGAACAGTCCATGCTTGGAAAATCACATCATTTAGG--
* * ** ** * *
383 TAAATTGTTGTCATTCTGTAAACTTCTTCCGGTTTTTCAATTA
383 TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * *
426 AAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCT----C-AGC--C-GAACTTGACAAAG
1 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCAAACTTCTGAACTTGACAAAC
* * * * * * *
483 TTTTACGAGTACTATTATAACTTTTGTTCATTTAAGTATTCAAGACGATCGATTCCTTCGAGTAA
66 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * ** * * *
548 TTTTCT-GTACAGTGCATGCTTGGGAAATTACATCCTTAGGTCTAAATAGTTGTCATTTTTTAAA
131 TTTTCTCGAACATTCCATGCTT-GGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* * * * *
612 CTACTTCTGGTCTTCT-AATTAAAAATTTATTTAGTTGAGAATTGTTTCTCTT-TTGGTTCTAGG
195 CAACTTTTGGTCTT-TGAATTAAAAAATTATTTAGTTGAGAATTATTTCT-TTCTTGGTTCTCGG
** * * *
675 TTGAACTTTCGAACTTGAAAAACTTTTACGAGTTAC-TTTATAATTTTGATTCCTTAAACTATTC
258 CCGAACTTT-AAACTTGAAAAACTTTTACGAGTT-CTTTTATAATTTTG-TTCATTAAAGTATTC
* * * * * *
739 AAGACGAT-CATTCCTTCGAGCAATTTTAAGAAAATTCTACGCTCTAG-AAATC-TATCATTTAG
320 AAGACGATCCATTCCTTCGAGCAATTTT--GAACAGTCCATGCT-TGGAAAATCACATCATTTAG
* * *
801 TGTAAATAATTGTCATTATGTAAACAACTTTTGGTCTCTGAATTA
382 -GTAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * *
846 ATAACTTTTTTAGGTGAGAATAGTTTCTCTCTTGTTTCTAGGCCAAACTTCTGAAGTTGACAAAC
1 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCAAACTTCTGAACTTGACAAAC
* ** * * * *
911 TTTTACGTGTTCTTTTATAACTTCAGTTCCTTACAGTAATCAAGACAAACCATTCCTTCGAGCAA
66 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
976 TTTTCT-GAACATTCCAAGCTCAGGGAATCTCATCATTTGGTCTAAATAGTTGTCGTTTTGTAAA
131 TTTTCTCGAACATTCCATGCT-TGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAA
* *
1040 CAACTTTTGGTCTTTGAATTAAAAAATTATTTA-TGTGAGAATTGTTTCTTTCTTGGTTCTCGGT
195 CAACTTTTGGTCTTTGAATTAAAAAATTATTTAGT-TGAGAATTATTTCTTTCTTGGTTCTCGGC
* * * * *
1104 CGAACTTTAAACTTGACATACATTTACGAGTTCGTTTATAACTTTTGTTCATTAAAGTATTCAGG
259 CGAACTTTAAACTTGAAAAACTTTTACGAGTTCTTTTATAA-TTTTGTTCATTAAAGTATTCAAG
* *
1169 ACGATCCATTCCTTCGAGCAATTTTCTGTACAGTCCATGCTTGGAAAATCACAACA-TTAGGTCA
323 ACGATCCATTCCTTCGAGCAA-TTT-TGAACAGTCCATGCTTGGAAAATCACATCATTTAGGT-A
** *
1233 AATAGTTGTCATTTTGTAAACAACTTTTATTTTTTGAATTA
385 AATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
1274 AAAACTTATTTAGGTGAGAATTA-TTTCTCTCTTGGTTCTCGACCAAACTTCCT-AACCTAACTA
1 AAAACTTATTTAGGTGAGAA-TAGTTTCTCTCTTGGTTCTAGGCCAAACTT-CTGAA-CT---TG
** * *
1337 ACTTTTTTAAAGAGTTCTTTTATAAGTTCTTTTATAACTTCGGTTCCTTAAAGTAATCAAGACGA
60 AC-------AA-A---CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
* * * * *
1402 TCTATTCCTTCGAGTAA-TTTCTGGAACATTCCATGCTCGAGAAATCGCACCATTTGGTCTAAAT
114 TCCATTCCTTCGAGCAATTTTCTCGAACATTCCATGCTTG-GAAATCGCATCATTTGGTCTAAAT
* * * ** * *
1466 AGTTGTTATTATGTAAACAAC-TTTGGATCTTTGAATTAATATCTT-CTTAG-TGAGAATAATTT
178 AGTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTAAAAAATTATTTAGTTGAGAATTATTT
* * * * * * *
1528 CTATCTTGGTTCTGGGCCGAACTTTCGAAGTTGACAAACTTTTACGATTTCTTTTATAACTTTGG
242 CTTTCTTGGTTCTCGGCCGAACTTT-AAACTTGAAAAACTTTTACGAGTTCTTTTATAA-TTTTG
* * * **
1593 TTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAATTTTTCGAACTTTCCATGCTTGG-AA
305 TTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTT-GAACAGTCCATGCTTGGAAA
* *
1657 ATCGCATCATTT-GGTTTAAATAGTTGTCATTTTGTAAACAACTTTAGGTCTTTGAATTA
368 ATCACATCATTTAGG--TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * *
1716 AAAAATTCTTTAGGTGAGAGTTGTTTCTTTCTTGGTTCTCA-GCCAAACTT-TAAACTTGACAAA
1 AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCT-AGGCCAAACTTCTGAACTTGACAAA
* * * * * *
1779 ATTTT-CAAGTTCTTTTATAAATTTTGTTCATTAAAGTATTCAAGACGATCCATTCTTTC-AGCA
65 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * ** * * * * *
1842 A---TAT---ATAGTCCGTGCTTGGGAAATCAAATTATTAGGTCTAAATTA-CTGTCATTCTAT-
130 ATTTTCTCGAACATTCCATGCTT-GGAAATCGCATCATTTGGTCTAAA-TAGTTGTCATTTTGTA
* * * * * * * * * * *
1899 AACTACTTTCGGTTTTTCAATTAAAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAG
193 AACAACTTTTGGTCTTTGAATTAAAAAATTATTTAGTTGAGAATTATTTCTTTCTTGGTTCTCGG
* * * *
1964 CCG-------AACTTGACAAAGTTTTACGAGTACTTTTATAACTTTTGCTCATTAAAGTATTCAA
258 CCGAACTTTAAACTTGAAAAACTTTTACGAGTTCTTTTATAA-TTTTGTTCATTAAAGTATTCAA
* * * * *
2022 GACGATCGATTCCTTCAAGTAATTTTCTGTACAGTCCATGCTTGGGAAATCACATCA-TTAGGTC
322 GACGATCCATTCCTTCGAGCAA-TTT-TGAACAGTCCATGCTTGGAAAATCACATCATTTAGG--
* * *
2086 TAAA-AGTTGTCATTTTTTAAACTACTTCTGGTCTT
383 TAAATAGTTGTCATTTTGTAAACAACTTTTGGTCTT
2121 CT
Statistics
Matches: 1378, Mismatches: 242, Indels: 163
0.77 0.14 0.09
Matches are distributed among these distances:
412 114 0.08
413 18 0.01
417 79 0.06
418 116 0.08
419 66 0.05
420 128 0.09
421 34 0.02
422 5 0.00
424 5 0.00
425 82 0.06
426 5 0.00
427 56 0.04
428 292 0.21
429 12 0.01
430 3 0.00
432 3 0.00
437 3 0.00
439 2 0.00
440 4 0.00
441 47 0.03
442 179 0.13
443 125 0.09
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (425 bp):
AAAACTTATTTAGGTGAGAATAGTTTCTCTCTTGGTTCTAGGCCAAACTTCTGAACTTGACAAAC
TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCTCGAACATTCCATGCTTGGAAATCGCATCATTTGGTCTAAATAGTTGTCATTTTGTAAAC
AACTTTTGGTCTTTGAATTAAAAAATTATTTAGTTGAGAATTATTTCTTTCTTGGTTCTCGGCCG
AACTTTAAACTTGAAAAACTTTTACGAGTTCTTTTATAATTTTGTTCATTAAAGTATTCAAGACG
ATCCATTCCTTCGAGCAATTTTGAACAGTCCATGCTTGGAAAATCACATCATTTAGGTAAATAGT
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
Found at i:1186 original size:214 final size:213
Alignment explanation
Indices: 1--2120 Score: 1880
Period size: 213 Copynumber: 10.0 Consensus size: 213
** * * * *
1 AAAACTTATTTAGGTGAGAATAATTTCTCTCTTGGTTTTGGGCCGAACTTTCGAAGTTGACAAAC
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTT-GAACTTGACAAAC
* * * * *
66 TTTTACG-GTTTCTTTTATATCTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCA
65 TTTTACGAG-TTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
** * *
130 ATTTT-TCGAACTTTCCATGCTTGGAAATCGCATCACTT-GGTTTAAATAGTTGTCATTTTGTAA
129 ATTTTCT-GAACAGTCCATGCTTGGAAATCACATCA-TTAGGTCTAAATAGTTGTCATTTTGTAA
*
193 ACAACTTTTGGCCTTTGAATTA
192 ACAACTTTTGGTCTTTGAATTA
* * * * * *
215 AAAAATTCTTTAGGTGAGAATTATTTCTTTCTTGGTTCTCGGCCAAACTTTAAACTTGACAAAAT
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
* * * * *
280 TTT-CAAGTTCTTTTATAAATTTTGTTCATTAAATTA-TCAAGACAATCCATTCCTTC-AACAAT
66 TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * ** * * * *
342 ATAT-TGTACAGTCTGTGCTTGGTAAATCACATTATTAGGCCTAAATTGTTGTCATTCTGTAAAC
131 -TTTCTGAACAGTCCATGCTTGG-AAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAAC
** ** * *
406 TTCTTCCGGTTTTTCAATTA
194 AACTTTTGGTCTTTGAATTA
* * * *
426 AAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAG-C---C---GAACTTGACAAAGT
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
* * * * *
484 TTTACGAGTACTATTATAACTTTTGTTCATTTAAGTATTCAAGACGATCGATTCCTTCGAGTAAT
66 TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * *
549 TTTCTGTACAGTGCATGCTTGGGAAATTACATCCTTAGGTCTAAATAGTTGTCATTTTTTAAACT
131 TTTCTGAACAGTCCATGCTT-GGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACA
*
614 ACTTCTGGTCTTCT-AATTA
195 ACTTTTGGTCTT-TGAATTA
* * * * *** *
633 AAAATTTATTTAGTTGAGAATTGTTTCTCTTTTGGTTCTAGGTTGAACTTTCGAACTTGAAAAAC
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTT-GAACTTGACAAAC
* *
698 TTTTACGAGTTAC-TTTATAA-TTTTGATTCCTTAAACTATTCAAGACGAT-CATTCCTTCGAGC
65 TTTTACGAGTT-CTTTTATAACTTTTG-TTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGC
** * * * * * * * * *
760 AATTTTAAGAAAATTCTACGCTCTAGAAATC-TATCATTTA-GTGTAAATAATTGTCATTATGTA
128 AATTTTCTGAACAGTCCATGCT-TGGAAATCACATCA-TTAGGTCTAAATAGTTGTCATTTTGTA
*
823 AACAACTTTTGGTCTCTGAATTA
191 AACAACTTTTGGTCTTTGAATTA
* * * * * *
846 ATAACTTTTTTAGGTGAGAATAGTTTCTCTCTTGTTTCTAGGCCAAACTTCTGAAGTTGACAAAC
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTT-TGAACTTGACAAAC
* ** * * * * *
911 TTTTACGTGTTCTTTTATAACTTCAGTTCCTTACAGTAATCAAGACAAACCATTCCTTCGAGCAA
65 TTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * *
976 TTTTCTGAACATTCCAAGCTCAGGGAATCTCATCATTTGGTCTAAATAGTTGTCGTTTTGTAAAC
130 TTTTCTGAACAGTCCATGCT-TGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAAC
1041 AACTTTTGGTCTTTGAATTA
194 AACTTTTGGTCTTTGAATTA
* * * * * * * *
1061 AAAAATTATTTATGTGAGAATTGTTTCTTTCTTGGTTCTCGGTCGAACTTTAAACTTGACATACA
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
* *
1126 TTTACGAGTTCGTTTATAACTTTTGTTCATTAAAGTATTCAGGACGATCCATTCCTTCGAGCAAT
66 TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
1191 TTTCTGTACAGTCCATGCTTGGAAAATCACAACATTAGGTC-AAATAGTTGTCATTTTGTAAACA
131 TTTCTGAACAGTCCATGCTTGG-AAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACA
** *
1255 ACTTTTATTTTTTGAATTA
195 ACTTTTGGTCTTTGAATTA
* * * * *
1274 AAAACTTATTTAGGTGAGAATTATTTCTCTCTTGGTTCTCGACCAAACTTCCT-AACCTAACTAA
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTT--TGAACTTGACAAA
* * *
1338 CTTTTTTAAAGAGTTCTTTTATAAGTTCTTTTATAACTTCGGTTCCTTAAAGTAATCAAGACGAT
64 C--TTTT-ACGAGTTCTTTTATAA---C---T-T---TT--GTTCATTAAAGTATTCAAGACGAT
* * * * * * *
1403 CTATTCCTTCGAGTAA-TTTCTGGAACATTCCATGCTCGAGAAATCGCACCATTTGGTCTAAATA
114 CCATTCCTTCGAGCAATTTTCT-GAACAGTCCATGCTTG-GAAATCACATCATTAGGTCTAAATA
* *
1467 GTTGTTATTATGTAAACAAC-TTTGGATCTTTGAATTA
177 GTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTA
* * * ** * * * *
1504 ATATCTT-CTTA-GTGAGAATAATTTCTATCTTGGTTCTGGGCCGAACTTTCGAAGTTGACAAAC
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTT-GAACTTGACAAAC
* * * * *
1567 TTTTACGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCATTCCTTCAAGCAA
65 TTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** * * *
1632 TTTT-TCGAACTTTCCATGCTTGGAAATCGCATCATTTGGTTTAAATAGTTGTCATTTTGTAAAC
130 TTTTCT-GAACAGTCCATGCTTGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAAC
*
1696 AACTTTAGGTCTTTGAATTA
194 AACTTTTGGTCTTTGAATTA
* * * * * * *
1716 AAAAATTCTTTAGGTGAGAGTTGTTTCTTTCTTGGTTCTCAGCCAAACTTTAAACTTGACAAAAT
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
* * *
1781 TTT-CAAGTTCTTTTATAAATTTTGTTCATTAAAGTATTCAAGACGATCCATTCTTTC-AGCAA-
66 TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * * *
1843 --TAT--ATAGTCCGTGCTTGGGAAATCAAATTATTAGGTCTAAATTA-CTGTCATTCTAT-AAC
131 TTTCTGAACAGTCCATGCTT-GGAAATCACATCATTAGGTCTAAA-TAGTTGTCATTTTGTAAAC
* * * *
1902 TACTTTCGGTTTTTCAATTA
194 AACTTTTGGTCTTTGAATTA
* * * *
1922 AAAACTTATTTAGGTGAGAATTGTTTCTCTATTCGTTCTCAG-C---C---GAACTTGACAAAGT
1 AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
* * * * *
1980 TTTACGAGTACTTTTATAACTTTTGCTCATTAAAGTATTCAAGACGATCGATTCCTTCAAGTAAT
66 TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
2045 TTTCTGTACAGTCCATGCTTGGGAAATCACATCATTAGGTCTAAA-AGTTGTCATTTTTTAAACT
131 TTTCTGAACAGTCCATGCTT-GGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACA
*
2109 ACTTCTGGTCTT
195 ACTTTTGGTCTT
2121 CT
Statistics
Matches: 1539, Mismatches: 298, Indels: 146
0.78 0.15 0.07
Matches are distributed among these distances:
199 15 0.01
200 48 0.03
201 4 0.00
202 1 0.00
204 18 0.01
205 37 0.02
206 131 0.09
207 131 0.09
208 6 0.00
209 1 0.00
210 20 0.01
211 107 0.07
212 130 0.08
213 295 0.19
214 262 0.17
215 135 0.09
216 4 0.00
217 14 0.01
218 1 0.00
219 1 0.00
220 1 0.00
222 1 0.00
223 1 0.00
224 1 0.00
225 14 0.01
226 5 0.00
227 2 0.00
228 45 0.03
229 69 0.04
230 39 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (213 bp):
AAAACTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTCGGCCAAACTTTGAACTTGACAAACT
TTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
TTTCTGAACAGTCCATGCTTGGAAATCACATCATTAGGTCTAAATAGTTGTCATTTTGTAAACAA
CTTTTGGTCTTTGAATTA
Found at i:1366 original size:12 final size:12
Alignment explanation
Indices: 1349--1373 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1339 TTTTTTAAAG
1349 AGTTCTTTTATA
1 AGTTCTTTTATA
1361 AGTTCTTTTATA
1 AGTTCTTTTATA
1373 A
1 A
1374 CTTCGGTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
AGTTCTTTTATA
Done.