genome.fa.s10357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010357.1 Kokia drynarioides strain JFW-HI SEQ_125228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  237765

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7192--7228	19	1.9	19	88	0	56	13	32	21	32	1.92
10430--10473	23	2.0	22	86	4	61	38	0	15	45	1.47
16782--17427	90	7.2	90	82	2	710	28	25	18	27	1.98
23519--23569	24	2.1	24	88	0	75	25	21	23	29	1.99
28159--28233	24	3.1	24	92	3	116	25	24	24	26	2.00
42223--42275	16	3.5	15	75	19	56	30	0	5	64	1.17
42277--42332	28	2.0	28	100	0	112	39	0	25	35	1.56
52538--52575	19	2.1	19	85	5	51	71	7	21	0	1.11
52678--52719	18	2.4	18	88	4	59	19	11	11	57	1.65
67023--67251	126	1.8	126	82	3	300	29	20	20	29	1.98
67122--67541	139	3.0	139	76	8	382	33	19	20	26	1.96
69536--69565	6	5.0	6	91	0	51	16	20	46	16	1.84
73891--73951	27	2.3	27	85	0	77	21	21	14	42	1.88
73903--73977	27	2.8	27	84	8	91	18	22	17	41	1.90
74177--74300	45	2.8	45	88	0	185	28	19	12	40	1.87
76008--76034	6	4.5	6	100	0	54	14	85	0	0	0.61
76175--76199	2	12.5	2	100	0	50	0	48	0	52	1.00
85421--85475	27	2.0	27	96	0	101	36	7	23	32	1.82
85587--85617	2	15.5	2	100	0	62	51	0	0	48	1.00
87904--87941	18	2.1	18	85	9	51	15	13	2	68	1.32
96338--96381	23	2.0	22	86	4	61	45	15	0	38	1.47
103595--103747	80	1.9	80	86	2	218	22	19	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110744--110900	80	2.0	80	84	2	208	24	20	24	29	1.99
124024--124049	4	6.5	4	100	0	52	0	26	0	73	0.84
128492--128532	21	2.0	21	90	9	66	26	12	7	53	1.64
129204--129277	37	2.0	37	100	0	148	35	18	21	24	1.96
133733--133793	17	3.6	16	78	10	59	16	19	18	45	1.85
150052--150117	28	2.4	27	80	7	78	22	12	27	37	1.90
150862--150895	8	4.2	8	96	0	59	14	41	0	44	1.45
152085--152121	14	2.8	13	92	8	65	27	29	13	29	1.94
155999--156034	12	3.2	12	85	14	51	61	0	38	0	0.96
157084--157114	16	1.9	16	93	0	53	77	0	22	0	0.77
157891--157917	7	3.9	7	100	0	54	59	0	29	11	1.32
159906--159938	13	2.6	13	90	4	50	63	0	0	36	0.95
164149--164217	26	2.7	26	84	4	77	27	28	18	24	1.98
164201--164320	25	4.8	25	75	0	105	34	23	15	27	1.94
164160--164320	50	3.2	50	79	1	142	33	24	16	24	1.96
167510--167537	3	9.3	3	100	0	56	64	0	35	0	0.94
167698--167853	77	2.0	77	94	0	276	37	19	17	25	1.94
172778--172822	9	5.0	9	81	8	56	0	40	11	48	1.39
172777--172823	18	2.6	19	86	10	71	0	40	10	48	1.38
179991--180026	16	2.2	17	90	9	58	22	5	16	55	1.62
203618--203653	18	1.9	19	88	5	56	36	13	0	50	1.43
222642--222715	37	2.0	37	97	0	139	39	5	13	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223460--223546	23	3.7	23	76	4	86	33	12	14	39	1.85
223921--223951	2	16.0	2	93	6	55	51	0	0	48	1.00
223970--224010	21	2.0	21	90	0	64	31	0	2	65	1.05
223996--224053	20	2.9	20	80	10	64	39	3	3	53	1.35
226489--226526	6	6.3	6	87	0	58	0	34	0	65	0.93
228551--228585	14	2.5	13	86	13	52	88	0	11	0	0.51
232166--232205	20	2.0	20	90	0	62	27	5	35	32	1.79
232361--232425	3	21.7	3	96	0	121	33	1	0	64	1.03
233638--233714	37	2.1	37	85	4	102	54	7	2	35	1.43

Tables:   1

The End!