genome.fa.s10360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010360.1 Kokia drynarioides strain JFW-HI SEQ_125231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32681

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5111--5164	18	3.3	16	85	12	74	9	22	1	66	1.30
5700--5728	14	2.1	14	100	0	58	51	0	13	34	1.42
6087--6149	15	4.2	15	72	0	54	28	25	23	22	1.99
9054--9116	32	2.0	32	90	0	99	41	17	7	33	1.79
9151--9260	39	2.8	39	79	6	134	50	15	6	27	1.68
12340--12472	31	4.3	30	73	15	85	5	26	0	67	1.16
15593--15654	32	1.9	32	90	0	97	38	17	11	32	1.85
15713--15801	39	2.3	39	86	3	117	52	15	5	25	1.64
15728--15813	38	2.3	36	80	11	100	48	15	5	30	1.68
16501--16526	9	2.9	9	100	0	52	34	11	30	23	1.90
16653--16702	15	3.3	15	83	10	66	26	28	24	22	1.99
16735--18765	216	9.5	216	82	4	2210	40	13	17	28	1.88
16735--18765	431	4.7	431	80	4	2165	40	13	17	28	1.88
20039--20088	15	3.3	15	81	10	57	20	30	26	24	1.98
20153--21367	216	5.8	213	77	8	1043	40	13	16	28	1.87
20606--21340	205	3.5	204	77	10	575	42	14	16	27	1.87
20151--21342	421	2.8	422	76	10	1159	40	13	16	29	1.87
21824--21988	80	2.1	79	86	3	233	28	15	20	36	1.92
22422--22584	49	3.4	48	85	5	222	53	12	8	25	1.66
22422--22583	48	3.4	48	85	5	227	53	12	8	25	1.67
23049--24883	216	8.5	214	80	5	1750	39	14	17	28	1.89
22902--24879	431	4.6	429	78	7	1892	39	14	17	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25862--25956	32	3.0	32	92	0	145	38	20	9	31	1.84
26097--26142	23	2.0	22	87	4	65	60	8	0	30	1.26
28054--30088	215	9.4	216	83	4	2224	40	13	16	28	1.87

Tables:   1

The End!