Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001037.1 Kokia drynarioides strain JFW-HI SEQ_112264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10900
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.34

Warning! 76 characters in sequence are not A, C, G, or T


Found at i:2543 original size:6 final size:6

Alignment explanation


    Indices: 2532--2559  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       2522 ACGTTATTTT

                                            
       2532 TTATAA TTATAA TTATAA TTATAA TTAT
          1 TTATAA TTATAA TTATAA TTATAA TTAT

       2560 TATATTTTAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (6 bp):   
TTATAA

Done.