Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010375.1 Kokia drynarioides strain JFW-HI SEQ_125248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1562
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.32


Found at i:1336 original size:23 final size:25

Alignment explanation


    Indices: 1276--1325  Score: 77
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1266 ATATTAAATT

                   *                 
       1276 AATAATATAAATATTCTTTCTAAAA
          1 AATAATAAAAATATTCTTTCTAAAA

                                     
       1301 AATAATAAAAATATT-TTTC-AAAA
          1 AATAATAAAAATATTCTTTCTAAAA

              
       1324 AA
          1 AA

       1326 GTTTAAAAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  23    6  0.25
  24    4  0.17
  25   14  0.58

ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36


Consensus pattern (25 bp):   
AATAATAAAAATATTCTTTCTAAAA
Done.