Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010380.1 Kokia drynarioides strain JFW-HI SEQ_125253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1669
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:852 original size:45 final size:45

Alignment explanation


    Indices: 733--858  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

        723 AGTATCGCGA

                  *       *  *           **  *   *       
        733 TGGCTCATCAAACTCAGCCTGATATCCTTCCCTAGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG

                        *                                
        778 TGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG

                                                
        823 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

        859 TGAGCTATGC


Statistics
Matches: 72,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  45   72  1.00

ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGG
Done.