Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010386.1 Kokia drynarioides strain JFW-HI SEQ_125264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2326
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39


Found at i:122 original size:22 final size:22

Alignment explanation


    Indices: 97--147  Score: 66
    Period size: 22  Copynumber: 2.3  Consensus size: 22

         87 TTTAAAATTT

                       **       * 
         97 TATTATTAATGTCAAAAAAATA
          1 TATTATTAATGGAAAAAAAAAA

                                  
        119 TATTATTAATGGAAAAAAAAAA
          1 TATTATTAATGGAAAAAAAAAA

             *     
        141 TCTTATT
          1 TATTATT

        148 TAAAACTTAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37


Consensus pattern (22 bp):   
TATTATTAATGGAAAAAAAAAA

Found at i:1301 original size:24 final size:24

Alignment explanation


    Indices: 1274--1327  Score: 65
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       1264 TTCTTTCGAT

                                     
       1274 TCATTTATTTA-TTTTACATTTTTA
          1 TCATTTATTTAGTTTTA-ATTTTTA

                **                  
       1298 TCATGAATTTAGTTTTAATTTTTA
          1 TCATTTATTTAGTTTTAATTTTTA

             *    
       1322 TGATTT
          1 TCATTT

       1328 TTAAAAATTT


Statistics
Matches: 24,  Mismatches: 5, Indels: 2
        0.77            0.16        0.06

Matches are distributed among these distances:
  24   19  0.79
  25    5  0.21

ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63


Consensus pattern (24 bp):   
TCATTTATTTAGTTTTAATTTTTA
Done.