Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010387.1 Kokia drynarioides strain JFW-HI SEQ_125265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1689
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:514 original size:17 final size:17

Alignment explanation


    Indices: 492--527  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        482 CCCAAGATTC

                             
        492 CATGTCTTCTTTGTCCA
          1 CATGTCTTCTTTGTCCA

                             
        509 CATGTCTTCTTTGTCCA
          1 CATGTCTTCTTTGTCCA

              
        526 CA
          1 CA

        528 ATAGCGAATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.14, C:0.31, G:0.11, T:0.44


Consensus pattern (17 bp):   
CATGTCTTCTTTGTCCA
Done.