Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010397.1 Kokia drynarioides strain JFW-HI SEQ_125276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2361
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1580 original size:24 final size:24

Alignment explanation


    Indices: 1571--1634  Score: 119
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       1561 CTCAATAAAA

                          *         
       1571 TAAACAGAGTTTAATTGAAACAAT
          1 TAAACAGAGTTTAACTGAAACAAT

                                    
       1595 TAAACAGAGTTTAACTGAAACAAT
          1 TAAACAGAGTTTAACTGAAACAAT

                            
       1619 TAAACAGAGTTTAACT
          1 TAAACAGAGTTTAACT

       1635 AAAAGATTAT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  24   39  1.00

ACGTcount: A:0.48, C:0.11, G:0.12, T:0.28


Consensus pattern (24 bp):   
TAAACAGAGTTTAACTGAAACAAT
Done.