Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010403.1 Kokia drynarioides strain JFW-HI SEQ_125285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Found at i:336 original size:9 final size:10

Alignment explanation


    Indices: 294--356  Score: 58
    Period size: 9  Copynumber: 5.9  Consensus size: 10

        284 ATTATTACCG

                      
        294 TAATTAATAA
          1 TAATTAATAA

                      
        304 TAA-TAATAA
          1 TAATTAATAA

                      
        313 TAA-TAATAA
          1 TAATTAATAA

                        
        322 TAATATAATTAA
          1 TAAT-TAA-TAA

                          
        334 TATTATTACCATAA
          1 TA--ATTA--ATAA

                     
        348 TAATTAATA
          1 TAATTAATA

        357 TTATTATTAA


Statistics
Matches: 46,  Mismatches: 0, Indels: 14
        0.77            0.00        0.23

Matches are distributed among these distances:
   9   18  0.39
  10    6  0.13
  11    3  0.07
  12    9  0.20
  13    2  0.04
  14    7  0.15
  15    1  0.02

ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40


Consensus pattern (10 bp):   
TAATTAATAA

Found at i:351 original size:3 final size:3

Alignment explanation


    Indices: 298--335  Score: 60
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        288 TTACCGTAAT

                                                               
        298 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TTAA TA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TA

        336 TTATTACCAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   2    2  0.06
   3   28  0.85
   4    3  0.09

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (3 bp):   
TAA
Done.