genome.fa.s10410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010410.1 Kokia drynarioides strain JFW-HI SEQ_125295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201824

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7996--8180	96	1.9	96	83	6	241	35	12	20	30	1.91
8434--8695	58	4.5	60	74	12	188	36	4	25	33	1.75
8415--8722	29	10.5	30	70	13	162	35	3	25	34	1.75
8555--8856	29	10.7	29	69	13	168	36	2	25	34	1.72
8691--8740	20	2.5	20	90	0	73	32	4	32	32	1.76
8649--8800	78	1.9	78	85	5	209	36	2	26	34	1.71
8711--8856	30	5.0	29	73	15	113	34	3	25	36	1.73
9912--9964	3	17.3	3	81	11	54	39	1	0	58	1.09
9916--10017	9	11.2	9	71	17	68	41	2	2	52	1.31
10649--10683	6	6.0	6	86	6	54	54	0	0	45	0.99
10642--10681	11	3.6	11	83	9	55	57	0	0	42	0.98
10785--10827	22	2.0	22	86	4	61	25	9	11	53	1.67
26298--26358	30	2.0	30	100	0	122	32	26	9	31	1.89
27066--27103	20	1.9	20	94	0	67	34	5	31	28	1.80
27068--27117	20	2.5	20	86	0	64	30	10	32	28	1.89
29263--29308	24	1.9	24	86	0	65	39	8	15	36	1.78
30857--30903	19	2.4	19	76	16	51	40	4	8	46	1.54
41472--41514	19	2.3	19	88	8	61	30	6	2	60	1.35
41581--41623	20	2.2	20	83	8	52	44	4	2	48	1.36
41580--41626	21	2.3	21	78	14	53	44	4	2	48	1.34
59079--59264	24	7.8	24	87	0	255	21	27	15	35	1.94
66460--66489	14	2.1	15	93	6	53	26	0	3	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69982--70041	30	2.0	29	93	3	102	38	23	11	26	1.89
75230--75336	4	26.8	4	88	0	106	22	6	26	44	1.77
77306--77343	20	1.9	20	100	0	76	55	0	18	26	1.43
79858--79896	16	2.5	15	83	4	51	71	0	0	28	0.86
105234--105258	2	12.5	2	100	0	50	48	0	52	0	1.00
107386--107483	30	3.2	30	70	11	83	42	1	6	50	1.34
107384--107504	61	2.0	61	83	3	154	45	2	7	44	1.45
108370--108395	13	2.0	13	100	0	52	76	0	0	23	0.78
120177--120243	29	2.2	31	86	5	93	23	8	26	40	1.84
120177--120223	13	3.4	13	78	16	58	25	8	23	42	1.82
122241--122306	28	2.3	29	82	7	91	43	7	6	42	1.57
123798--123853	29	1.9	29	100	0	112	78	7	7	7	1.09
123984--124009	11	2.4	11	100	0	52	7	0	0	92	0.39
123982--124016	15	2.2	17	90	10	56	8	0	2	88	0.61
125533--125566	13	2.6	13	100	0	68	17	44	5	32	1.73
129104--129293	87	2.2	87	83	1	229	33	22	14	30	1.93
141995--142192	102	1.9	102	90	2	317	25	22	13	38	1.91
149895--150014	62	1.9	62	85	6	163	33	14	10	41	1.80
149895--149987	31	3.0	29	75	10	96	33	12	12	40	1.82
152529--152660	66	2.0	66	86	8	189	31	25	12	30	1.93
163072--163317	41	5.9	41	84	3	260	26	26	10	36	1.90
167707--167914	106	2.0	106	99	0	407	42	5	16	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168049--168104	18	3.4	18	74	18	59	55	0	0	44	0.99
168080--168129	26	1.9	26	88	8	75	52	0	0	48	1.00
168068--168122	21	2.6	21	80	11	60	50	0	0	49	1.00
169787--169821	2	17.5	2	93	0	61	51	0	0	48	1.00
172809--172914	42	2.5	42	86	4	142	30	22	10	36	1.88
173264--173721	226	2.0	226	99	0	898	35	17	11	34	1.87
179850--179890	20	2.1	19	86	4	55	9	4	14	70	1.30
180685--180807	61	2.0	61	96	0	228	40	13	13	33	1.82
188186--188256	31	2.3	31	82	0	88	39	12	9	38	1.77
188372--188430	29	2.0	30	86	3	84	50	11	5	32	1.61
188837--188878	21	2.0	22	85	4	59	42	0	7	50	1.30
198604--198640	18	2.1	18	100	0	74	35	10	32	21	1.88

Tables:   1

The End!