Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010414.1 Kokia drynarioides strain JFW-HI SEQ_125300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3229
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Found at i:383 original size:215 final size:216
Alignment explanation
Indices: 92--3229 Score: 3722
Period size: 216 Copynumber: 14.5 Consensus size: 216
82 TTCTAGACGC
* * * * * *
92 TCCATTCGTTCGAGCAATTTTTCGAACATTCCATGCGT-GAGAAATCGCATCATTTGGTTTAAAT
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGC-TCGGGAAATCGAATCATTTGGTCTAAAT
*
156 AGTTTGTCATTTTGCAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
65 AGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
*
221 CTCTCTTTGTTCTTGGACGAACTTTCGAA-TTGTAAAACTTTTACGAGTTATTTTTTAACTTCGG
130 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGG
285 TTCCCAAAAGTATTCAACAAGA
195 TTCCCAAAAGTATTCAACAAGA
* * * *
307 TCCATTGCTTAGAGCAAATTTCCGAACATTTCATGCTCGGGAAATCAAATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* ** **
372 GTTTCTCATTTTGTGAACAAAATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
*
437 TCTCTTTGTTCTTGGACGAACTTTCGAA-TTG-CAAAACTTTTACGAGTTTTTTTTTAACTTCGG
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGG
500 TTCCCAAAAGTATTCAACAAGA
195 TTCCCAAAAGTATTCAACAAGA
* * * *
522 TCCATTCCTTAGAGCAAATTTCTGAACATTCCATGCTCGGGAAATCAAATAATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
** * *
587 GTTTGTCATTTTGTGAACAAATTTTGGTCTTTGAATTATAAACTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
652 TCTTTTTGTTCTTGGACGAACTTTCGAA-TT-TCAAAACTTTTACAAGTTATTTTTTAACTTTGG
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGG
*
715 TTCCCAAAAGTATTCAGCAAGA
195 TTCCCAAAAGTATTCAACAAGA
* * ** *
737 TCCATTCGTTAGAGCAAATTTCTAAACATTCCATGCTCGGGAAATCAAATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
** * * * *
802 GTTTGTCATTTTGTGAACAAATTTTGGTCTTTCAATTAGAAACTTATTTACGTGAGAATTATTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * *
867 TCTCTTTCTTCTTGGACGAACTTTCGAAGTTGTCAAACTTTTACTAGGTCTTTTATAACTTCGGA
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
* *
932 T-CCATAAAGTATTCAAGACGA
196 TCCCA-AAAGTATTCAACAAGA
* * * * *
953 TCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* * *
1018 GTTTGTCATTTTACAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTCACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
1083 TCTCTTTGTTCTTGGATGAACTTTTGAACTTGGCAAACTTTTACGAGTTATTTTTTAACTTCGGT
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
* *
1148 TCCCTACAGTATTCAACAAGA
196 TCCCAAAAGTATTCAACAAGA
* * * * *
1169 TCCATTCCTTAGAGCTATTTTCCGAACACTCCATGCTCGGTAAATCGTATTATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* * * * * *
1234 GTTTGTCAATTTGTAAACAAGTTTTGTTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* ** ** * * * * * * *
1299 TCTCTTTGCTCTTAAAAAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCTGA
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
** *
1364 TCCTTAAAGTATTCAAGAAGA
196 TCCCAAAAGTATTCAACAAGA
* * * ** * *
1385 TCTATT-CTTACGAACAATTTTTCGAACATTCCATGCTTTGGAAATCGCATCATTTTGTCTAAAT
1 TCCATTCCTTA-GAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAAT
* * * *
1449 AGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTT
65 AGTTTGTCAT-TTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * *
1514 TCTCCCTTTGTTCTTGGACGAACTTCCGAACTTGGCAAACTTTTACGAGTTATTTTTTAACTTCG
129 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCG
* * *
1579 GTTCACTACAGTATTCAACAAGA
194 GTTCCCAAAAGTATTCAACAAGA
* * * * * *
1602 TCCAATCCTTAAAGCAATTTTCC-AAGCATTCCATGTTCGGGAAATTGAATCATTTAGTCTAACT
1 TCCATTCCTTAGAGCAATTTTCCGAA-CATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAAT
* * * * * * * *
1666 AGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGAATTAAATACTTATTTACGAGGGAATTGTCT
65 AGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * * * * * * **
1731 CTCTCTTGGTTCATGGACGATCTATCGAACCTT-TCTAACTTTGAGGAGATCTTTTATAACTTAA
130 CTCTCTTTGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTATTTTTTAACTTCG
* ** * *
1795 CTTCCTTAAAGTATTCAAGACGA
194 GTTCCCAAAAGTATTCAACAAGA
* * *
1818 TCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
** * * *
1883 GTTTGTCATTTTGGGAACAAATTTTGGTCTTTCAATTAAAAACTTATTTACGTGGGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
1948 TCTCTTTGTTCTTGGACGAACTTTCGAA-TTG-CAAAACTTTTACGAGTTATTTTTTAACTTCGG
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCGG
2011 TTCCCAAAAGTATTCAACAAGA
195 TTCCCAAAAGTATTCAACAAGA
* ** * *
2033 TCCATTCCTTAGAGCAAATTTCTAAACATTCCATGCTCGAGAAATCAAATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
** * * *
2098 GTTTGTCATTTTGTGAACAAATTTTGGTCTTTGAATTAGAAACTTATTTACGTGAGAATTATTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * * *
2163 TCTCTTTCTTCTTGGACGAACTTTCGAAGTTGTCAAAGTTTTACTAGGTCTTTTATAACTTCGGA
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
* *
2228 T-CCATAAAGTATTCAAGACGA
196 TCCCA-AAAGTATTCAACAAGA
* * * *
2249 TCCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGTAAATCGCATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* *
2314 GTTTGTCTTTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
2379 TCTCTTTGTTCTTGGATGAACTTTCGAACTTGGCAAACTTTTACGAGTTATTTTTTAACTTCGGT
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
* *
2444 TCCCTACAGTATTCAACAAGA
196 TCCCAAAAGTATTCAACAAGA
* * * * * *
2465 TCCAATCCTTAAAGCAATTTTCC-AAGCATTCCATGCTCGAGAAATCGCATCATTTAGTCTAACT
1 TCCATTCCTTAGAGCAATTTTCCGAA-CATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAAT
* * * * * * *
2529 AGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGAATTAAATACTTATTTACGAGAGAATTGTCT
65 AGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * ** ** * * * * ***
2594 CTCTCTTGGTTCATGGACGATCTATCCAACTTGTTTAACTTCGAGGAGATCTTTTATAACTTAAC
130 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGG
*** * *
2659 TTCCTTGAAGTATTCAAGATGA
195 TTCCCAAAAGTATTCAACAAGA
* ** * *
2681 TCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGACAAATCGTATCATTTGGTCTAAAAA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* *
2746 GTTTGTCTTTTTGCAAACAAGTTTTGGTCTTT-AATTTAAAAACTTATTTACGTGAGAATTCTTT
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTT
* * *
2810 CTCTCTTTGTTCTTGGATGAACTTCCGAA-TTG-CAAAACTTTTACGAGTTATTTGTTAACTTCG
130 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC-AAACTTTTACGAGTTATTTTTTAACTTCG
2873 GTTCCCAAAAGTATTCAACAAGA
194 GTTCCCAAAAGTATTCAACAAGA
* * * * *
2896 TCCATTCCTTAGAGCTATTTTTCGAACACTCCATGCTCGGTAAATCGTATCATTTGGTCTAAATA
1 TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
* * * * * *
2961 GTTTGTCAATTTGTAAACAAGTTTTGTTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* ** ** * * * * *
3026 TCTCTTTGCTCTTAAAAAAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGA
131 TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
** *
3091 TCCTTAAAGTATTCAAGAAGA
196 TCCCAAAAGTATTCAACAAGA
* * * ** * *
3112 TCTATT-CTTACGAACAATTTTTCGAACATTCCAT-CTTTGGAAATCGCATCATTTTGTCTAAAT
1 TCCATTCCTTA-GAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAAT
* * * *
3175 AGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGT
65 AGTTTGTCAT-TTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
Statistics
Matches: 2480, Mismatches: 415, Indels: 55
0.84 0.14 0.02
Matches are distributed among these distances:
214 4 0.00
215 952 0.38
216 1336 0.54
217 184 0.07
218 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
TCCATTCCTTAGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCTAAATA
GTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCGGT
TCCCAAAAGTATTCAACAAGA
Found at i:2558 original size:863 final size:864
Alignment explanation
Indices: 1--3229 Score: 4603
Period size: 863 Copynumber: 3.7 Consensus size: 864
* *
1 GTCTCTCTCTTGGTTCATGGACGATCTATCGAACTTTTCTAACTTCGAAGAGATCTTTTATAACT
1 GTCTCTCTCTTGGTTCATGGACGATCTATCGAACTTGTCTAACTTCGAGGAGATCTTTTATAACT
* * *
66 TAACTTCCTTAAAGTATTCTAGACGCTCCATTCGTTCGAGCAATTTTTCGAACATTCCATGCGT-
66 TAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TC
* *
130 GAGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGCAAA-AAAGTTTTGGTCTTTGAATT
130 GACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAA-TTTTGGTCTTTGAATT
*
194 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGTAAAAC
194 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGCAAAAC
*
259 TTTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTGCTTAGAGCAA
259 TTTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAA
* * * * * *
324 ATTTCCGAACATTTCATGCTCGGGAAATCAAATCATTTGGTCTAAATAGTTTCTCATTTTGTGAA
324 ATTTCCGAACACTCCATGCTCGGTAAATCAAATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA
* * * * * ** *
389 CAAAATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAC
389 CAAATTTTGGTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAA
* * * * * *
454 GAACTTTCGAA-TTG-CAAAACTTTTACGAGTTTTTTTTTAACTTCGGTTCCCA-AAAGTATTCA
454 AAACTTTCGAACTTGTC-AAACTTTTACTAGTTCTTTTATAACATCGGAT-CCATAAAGTATTCA
* * * * ** *
516 ACAAGATCCATTCCTTA-GAGCAAATTTCTGAACATTCCATGC-TCGGGAAATCAAATAATTTGG
517 AGAAGATCCATT-CTTACGAACAATTTTCCGAACATTCCATGCTTC-GGAAATCGCATCATTTGG
* ** * * * *
579 TCTAAATAGTTTGTCAT-TTTGTGAACAAATTTTGGTCTTTGAATTATAAACTTATTTACGTGAG
580 TCTAAATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGAG
* * *
643 AATTGTTTCTCTTTTTGTTCTTGGACGAACTTTCGAA-TT-TCAAAACTTTTACAAGTTATTTTT
645 AATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGGC-AAACTTTTACGAGTTATTTTT
* * * * * * * * * *
706 TAACTTTGGTTCCCAAAAGTATTCAGCAAGATCCATTCGTTAGAGCAAATTTCTAAACATTCCAT
709 TAACTTCGGTTCCCTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCAT
* * * * * * * * *
771 GCTCGGGAAATCAAATCATTTGGTCTAAATAGTTTGTCATTTTGTGAACAAATTTTGGTCTTTCA
774 GCTCGGGAAATCGAATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGA
*
836 ATTAGAA-ACTTATTTACGTGAGAATT
839 ATTA-AATACTTATTTACGAGAGAATT
* * ** * * * * * ** ** *
862 ATTTCTCTCTTTCTTCTTGGACGAACTTTCGAAGTTGTCAAACTTTTACTAGGTCTTTTATAACT
1 GTCTCTCTCTTGGTTCATGGACGATCTATCGAACTTGTCTAACTTCGAGGAGATCTTTTATAACT
**** * *
927 TCGGATCCATAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCG
66 TAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * * *
992 GCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTACAAACAAGTTTTGGTCTTTGGATTAA
131 ACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAATTTTGGTCTTTGAATTAA
* * *
1057 AAACTTATTCACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTTGAACTTGGC-AAAC
196 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAA-TT-GCAAAAC
* * *
1121 TTTTACGAGTTATTTTTTAACTTCGGTTCCCTACAGTATTCAACAAGATCCATTCCTTAGAGCTA
259 TTTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAA
* ** *
1186 TTTTCCGAACACTCCATGCTCGGTAAATCGTATTATTTGGTCTAAATAGTTTGTCAATTTGTAAA
324 ATTTCCGAACACTCCATGCTCGGTAAATCAAATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA
* *
1251 CAAGTTTTGTTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAA
389 CAAATTTTGGTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAA
* * *
1316 AAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCTGATCCTTAAAGTATTCAAG
454 AAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGATCCATAAAGTATTCAAG
* * * *
1381 AAGATCTATTCTTACGAACAATTTTTCGAACATTCCATGCTTTGGAAATCGCATCATTTTGTCTA
519 AAGATCCATTCTTACGAACAATTTTCCGAACATTCCATGCTTCGGAAATCGCATCATTTGGTCTA
1446 AATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGAGAATT
584 AATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGAGAATT
* *
1511 GTTTCTCCCTTTGTTCTTGGACGAACTTCCGAACTTGGCAAACTTTTACGAGTTATTTTTTAACT
649 GTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGGCAAACTTTTACGAGTTATTTTTTAACT
* *
1576 TCGGTTCACTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCATGTTCG
714 TCGGTTCCCTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCATGCTCG
*
1641 GGAAATTGAATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGAATTAA
779 GGAAATCGAATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGAATTAA
*
1706 ATACTTATTTACGAGGGAATT
844 ATACTTATTTACGAGAGAATT
*
1727 GTCTCTCTCTTGGTTCATGGACGATCTATCGAACCTT-TCTAACTTTGAGGAGATCTTTTATAAC
1 GTCTCTCTCTTGGTTCATGGACGATCTATCGAA-CTTGTCTAACTTCGAGGAGATCTTTTATAAC
*
1791 TTAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTC
65 TTAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC
** * ** *
1856 GGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGGGAACAAATTTTGGTCTTTCAATTA
130 GACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAATTTTGGTCTTTGAATTA
*
1921 AAAACTTATTTACGTGGGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGCAAAACT
195 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGCAAAACT
1986 TTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAAA
260 TTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAAA
** * * *
2051 TTTCTAAACATTCCATGCTCGAG-AAATCAAATCATTTGGTCTAAATAGTTTGTCATTTTGTGAA
325 TTTCCGAACACTCCATGCTCG-GTAAATCAAATCATTTGGTCTAAATAGTTTGTCAATTTGTAAA
* * * **
2115 CAAATTTTGGTCTTTGAATTAGAA-ACTTATTTACGTGAGAATTATTTCTCTCTTT-CTTCTTGG
389 CAAATTTTGGTCCTTGAAATA-AATACTTATTTACGTGAGAATTGTTTCTCTCTTTGC-TCTTAA
** * * * *
2178 ACGAACTTTCGAAGTTGTCAAAGTTTTACTAGGTCTTTTATAACTTCGGATCCATAAAGTATTCA
452 AAAAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGATCCATAAAGTATTCA
*
2243 AGACGATCCATTCCTT-CGAGA-AATTTTCCGAACATTCCATGC-TCGGTAAATCGCATCATTTG
517 AGAAGATCCATT-CTTACGA-ACAATTTTCCGAACATTCCATGCTTCGG-AAATCGCATCATTTG
* *
2305 GTCTAAATAGTTTGTCTT-TTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTCACGTGA
579 GTCTAAATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGA
*
2369 GAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGGCAAACTTTTACGAGTTATTTTT
644 GAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGGCAAACTTTTACGAGTTATTTTT
2434 TAACTTCGGTTCCCTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCAT
709 TAACTTCGGTTCCCTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCAT
* *
2499 GCTCGAGAAATCGCATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGA
774 GCTCGGGAAATCGAATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGA
2564 ATTAAATACTTATTTACGAGAGAATT
839 ATTAAATACTTATTTACGAGAGAATT
* *
2590 GTCTCTCTCTTGGTTCATGGACGATCTATCCAACTTGTTTAACTTCGAGGAGATCTTTTATAACT
1 GTCTCTCTCTTGGTTCATGGACGATCTATCGAACTTGTCTAACTTCGAGGAGATCTTTTATAACT
* * *
2655 TAACTTCCTTGAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCG
66 TAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
* * * *
2720 ACAAATCGTATCATTTGGTCTAAAAAGTTTGTCTTTTTGCAAACAAGTTTTGGTCTTT-AATTTA
131 ACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAATTTTGGTCTTTGAA-TTA
* * *
2784 AAAACTTATTTACGTGAGAATTCTTTCTCTCTTTGTTCTTGGATGAACTTCCGAATTGCAAAACT
195 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGCAAAACT
* * *
2849 TTTACGAGTTATTTGTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCTAT
260 TTTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAAA
* **
2914 TTTTCGAACACTCCATGCTCGGTAAATCGTATCATTTGGTCTAAATAGTTTGTCAATTTGTAAAC
325 TTTCCGAACACTCCATGCTCGGTAAATCAAATCATTTGGTCTAAATAGTTTGTCAATTTGTAAAC
* *
2979 AAGTTTTGTTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAAA
390 AAATTTTGGTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAAA
*
3044 AACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGATCCTTAAAGTATTCAAGA
455 AACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGATCCATAAAGTATTCAAGA
* * * *
3109 AGATCTATTCTTACGAACAATTTTTCGAACATTCCAT-CTTTGGAAATCGCATCATTTTGTCTAA
520 AGATCCATTCTTACGAACAATTTTCCGAACATTCCATGCTTCGGAAATCGCATCATTTGGTCTAA
3173 ATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGT
585 ATAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGT
Statistics
Matches: 2098, Mismatches: 240, Indels: 58
0.88 0.10 0.02
Matches are distributed among these distances:
860 1 0.00
861 211 0.10
862 239 0.11
863 897 0.43
864 374 0.18
865 373 0.18
866 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (864 bp):
GTCTCTCTCTTGGTTCATGGACGATCTATCGAACTTGTCTAACTTCGAGGAGATCTTTTATAACT
TAACTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG
ACAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAATTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAATTGCAAAACTT
TTACGAGTTATTTTTTAACTTCGGTTCCCAAAAGTATTCAACAAGATCCATTCCTTAGAGCAAAT
TTCCGAACACTCCATGCTCGGTAAATCAAATCATTTGGTCTAAATAGTTTGTCAATTTGTAAACA
AATTTTGGTCCTTGAAATAAATACTTATTTACGTGAGAATTGTTTCTCTCTTTGCTCTTAAAAAA
ACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACATCGGATCCATAAAGTATTCAAGAA
GATCCATTCTTACGAACAATTTTCCGAACATTCCATGCTTCGGAAATCGCATCATTTGGTCTAAA
TAGTTTGTCTTCTTTGCAAACAACTTTCGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGT
TTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGGCAAACTTTTACGAGTTATTTTTTAACTTC
GGTTCCCTACAGTATTCAACAAGATCCAATCCTTAAAGCAATTTTCCAAGCATTCCATGCTCGGG
AAATCGAATCATTTAGTCTAACTAGTTTGTCACTTTGTAAACAAGTTTTAGTCATTGAATTAAAT
ACTTATTTACGAGAGAATT
Done.