genome.fa.s10424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010424.1 Kokia drynarioides strain JFW-HI SEQ_125311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88240

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419--1749	30	11.2	30	75	10	288	33	32	2	31	1.72
1419--1765	29	11.7	30	74	15	294	33	32	2	31	1.72
1416--1771	59	6.0	59	88	2	498	33	33	2	30	1.72
2586--2663	39	2.0	39	97	2	140	33	7	10	47	1.66
3085--3361	138	2.0	138	97	0	527	20	31	9	38	1.84
4774--4817	23	1.9	23	85	0	61	15	20	20	43	1.88
13912--14045	58	2.3	58	83	1	162	47	14	10	27	1.77
15369--15404	17	2.1	18	90	10	58	38	2	0	58	1.13
20603--20780	28	6.4	28	84	3	198	32	13	19	34	1.91
23217--23243	3	9.0	3	100	0	54	66	0	0	33	0.92
28513--28572	26	2.2	28	80	11	72	65	0	0	35	0.93
29719--29856	55	2.5	52	79	14	136	63	4	3	28	1.30
29816--29860	21	2.1	22	84	12	58	64	2	0	33	1.06
29772--29898	55	2.3	57	78	9	127	59	2	2	36	1.23
30281--30329	25	2.0	24	88	4	71	42	2	2	53	1.24
30324--30366	19	2.3	18	84	8	50	48	0	0	51	1.00
38925--39135	30	7.2	29	73	12	103	34	5	24	36	1.78
38965--39184	30	7.4	28	78	12	156	34	7	21	37	1.81
38966--39158	60	3.2	58	81	7	226	33	7	22	37	1.82
38966--39199	119	2.0	119	83	8	298	35	7	21	36	1.81
38983--39241	119	2.2	119	81	6	292	35	6	20	37	1.80
38941--39241	90	3.4	89	77	11	219	35	6	20	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39174--39246	30	2.4	30	79	4	76	41	4	16	38	1.67
42576--42629	21	2.6	21	88	5	74	29	11	33	25	1.91
42593--42647	21	2.6	21	88	0	74	25	14	27	32	1.95
46830--46881	18	2.9	18	91	0	77	59	0	26	13	1.34
59138--59190	22	2.4	23	76	23	60	37	3	0	58	1.16
61653--61751	47	2.1	47	87	10	141	27	11	20	41	1.86
61905--61958	20	2.6	21	76	5	56	16	7	16	59	1.59
62123--62287	42	4.0	42	83	2	190	20	10	12	56	1.64
62126--62276	21	7.2	21	71	11	94	21	9	12	56	1.63
62269--62332	20	3.2	19	72	16	58	18	14	9	57	1.63
62488--62599	21	5.3	21	68	4	82	22	9	14	53	1.70
62492--62601	42	2.6	42	86	0	139	22	10	13	52	1.71
62607--62656	20	2.5	20	80	6	57	24	14	12	50	1.76
62165--62871	323	2.2	320	86	3	988	26	16	12	44	1.83
62808--62894	21	4.1	21	73	15	63	17	10	13	58	1.62
62530--63218	280	2.5	280	82	4	775	25	17	11	45	1.82
63097--63162	21	3.1	22	76	8	73	16	7	16	59	1.59
63097--63204	42	2.6	42	83	0	126	19	11	13	55	1.68
63461--63499	20	2.0	20	84	0	51	23	10	12	53	1.69
63919--64110	44	4.3	44	72	8	138	47	18	5	28	1.71
63919--64110	90	2.2	88	83	3	233	47	18	5	28	1.71
63960--64110	44	3.4	46	75	6	157	50	15	5	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64219--64807	54	11.1	54	76	9	383	28	19	14	38	1.90
64243--64796	108	5.2	108	76	8	481	28	19	13	38	1.90
64358--64459	48	2.1	48	85	3	134	27	16	15	40	1.89
64297--64827	162	3.3	159	78	7	483	28	19	14	38	1.90
65558--65621	16	4.0	16	68	22	53	17	43	14	25	1.86
66039--66104	31	2.1	31	83	10	82	36	12	12	39	1.80
67738--67816	38	2.1	37	84	9	99	29	2	8	59	1.41
84874--84926	26	2.0	26	96	0	97	35	22	16	24	1.95
87721--87875	51	3.0	51	88	1	231	34	24	10	30	1.90

Tables:   1

The End!