Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010435.1 Kokia drynarioides strain JFW-HI SEQ_125325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2149
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37


Found at i:967 original size:17 final size:17

Alignment explanation


    Indices: 945--1021  Score: 102
    Period size: 17  Copynumber: 4.5  Consensus size: 17

        935 GACATTTTAT

                       *     
        945 ATTTAAATTTATAATAA
          1 ATTTAAATTTAAAATAA

                              
        962 ATTTAAATTTCAAAA-AA
          1 ATTTAAATTT-AAAATAA

                             
        979 ATTTAAATTTAAAATAA
          1 ATTTAAATTTAAAATAA

             *    *          
        996 ACTTAATTTTAAAATAA
          1 ATTTAAATTTAAAATAA

               *     
       1013 ATTCAAATT
          1 ATTTAAATT

       1022 CCAATAGGCC


Statistics
Matches: 52,  Mismatches: 6, Indels: 4
        0.84            0.10        0.06

Matches are distributed among these distances:
  16    4  0.08
  17   45  0.87
  18    3  0.06

ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42


Consensus pattern (17 bp):   
ATTTAAATTTAAAATAA

Done.