Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010436.1 Kokia drynarioides strain JFW-HI SEQ_125326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.16, C:0.11, G:0.10, T:0.27

Warning! 405 characters in sequence are not A, C, G, or T


Found at i:1040 original size:215 final size:215

Alignment explanation


    Indices: 658--1138  Score: 779
    Period size: 215  Copynumber: 2.2  Consensus size: 215

        648 NNNNNNNNNN

                                                                             
        658 GTCCAAATGCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTCAG
          1 GTCCAAATGCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTCAG

                                             *       *                       
        723 ATTGTTTCTCTTTTGGTTCTTGGACGAACTTATGAACTTGTGAAACTTTTACGAGTTCTTTTATA
         66 ATTGTTTCTCTTTTGGTTCTTGGACGAACTTATAAACTTGTCAAACTTTTACGAGTTCTTTTATA

                                 *        *                                  
        788 ACTTTGGTTCCTTAAAGTATTTAAGACGATTCATTCCTTCGAGTA-ATTTTTCGAACATTCCATG
        131 ACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-ACATTTTTCGAACATTCCATG

                                 
        852 CTCGGGAAATCGCATCATTTG
        195 CTCGGGAAATCGCATCATTTG

                                  *            *                       *     
        873 GTCCAAATGCTTTGTCA-TTTGGAAACAACTTTTGATCTTTGAATTTAAAACTTATTTATGTCAG
          1 GTCCAAATGCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTCAG

                                     *      *                               *
        937 AATTGTTTCTCTTTTGGTTCTTGGATGAA-TTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTG
         66 -ATTGTTTCTCTTTTGGTTCTTGGACGAACTTAT-AAACTTGTCAAACTTTTACGAGTTCTTTTA

                             *       * *                                     
       1001 TAACTTTGGTTCCTTAACGTATTCATGGCGATCCATTCCTTCGAGACATTTTTCGAACATTCCAT
        129 TAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCAT

                                  
       1066 GCTCGGGAAATCGCATCATTTG
        194 GCTCGGGAAATCGCATCATTTG

                       *                               *       
       1088 GTCCAAATGCTCTGTCATTTTGTAAACAACTTTTGGTCTTTGACTTTAAAA
          1 GTCCAAATGCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAA

       1139 T


Statistics
Matches: 245,  Mismatches: 17, Indels: 7
        0.91            0.06        0.03

Matches are distributed among these distances:
 214   48  0.20
 215  167  0.68
 216   30  0.12

ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42


Consensus pattern (215 bp):   
GTCCAAATGCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTCAG
ATTGTTTCTCTTTTGGTTCTTGGACGAACTTATAAACTTGTCAAACTTTTACGAGTTCTTTTATA
ACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGACATTTTTCGAACATTCCATGC
TCGGGAAATCGCATCATTTG
Done.