Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010437.1 Kokia drynarioides strain JFW-HI SEQ_125327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4248
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:1369 original size:167 final size:168

Alignment explanation


    Indices: 1072--1589  Score: 657
    Period size: 167  Copynumber: 3.1  Consensus size: 168

       1062 TCGAGGATGA

                                                   **           *    *   *   
       1072 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCTACATACAAATTCGGCACAAATAAAT
          1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT

             *         *                    *                  *             
       1137 ATCAATCAGCAATTGACCAGCTCACAGGCTGGATTAGACTTCAATTTTACAGGTCATCCGAATAG
         66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAAGTCATCCGAATAG

                                    *          *   
       1202 TACATCTTCCAAACAATGTCCAATTCCAGGGGTG-TTAG
        131 TACATCTTCCAAACAATGTCCAATGCCAGGGGTGACT-G

                                                                           * 
       1240 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATAC-AATTCAGCACCAATGAGT
          1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT

                             *                        *           **  *      
       1304 AACAATCAGCAGTTGACTAGCTCACAGGCTGGCTTAGACTTCTATTTTACAAGTTGTCTGAATAG
         66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAAGTCATCCGAATAG

             *         *  *                       
       1369 TTCATCTTCCAGACCATGTCCAATGCCAGGGGTGACTG
        131 TACATCTTCCAAACAATGTCCAATGCCAGGGGTGACTG

            *       *                                  *                     
       1407 AAGGACAAAATCCATCACAACAGATTCAAGCATCAGCTCCGCACACAAATTCAGCACCAATGAAT
          1 GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT

               *                          *                  * *  *    *     
       1472 AACGATCAGCAGTTGACCAGCTCAC-GGCTAGCTTAGACTTCAATTTTATAGGTAATCCAAATAG
         66 AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAAGTCATCCGAATAG

             *                                            
       1536 TTCATCTTCCAAAGTCCAGACCATGTCCAATGCCAGGGGTGA-TAG
        131 TACATCTTCCAAA---C--A--ATGTCCAATGCCAGGGGTGACT-G

                     
       1581 GAGGACAAC
          1 GAGGACAAC

       1590 CATCATCTTC


Statistics
Matches: 302,  Mismatches: 38, Indels: 14
        0.85            0.11        0.04

Matches are distributed among these distances:
 167  187  0.62
 168   85  0.28
 170    1  0.00
 173    1  0.00
 174   28  0.09

ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23


Consensus pattern (168 bp):   
GAGGACAACATCCATCACAACAGATTCAAGCATCAGCTCCGCATACAAATTCAGCACCAATGAAT
AACAATCAGCAGTTGACCAGCTCACAGGCTGGCTTAGACTTCAATTTTACAAGTCATCCGAATAG
TACATCTTCCAAACAATGTCCAATGCCAGGGGTGACTG
Done.